Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 923 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482
Score = 756 bits (1951), Expect = 0.0
Identities = 429/942 (45%), Positives = 594/942 (63%), Gaps = 32/942 (3%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I ++GAR +NLKNI++ IPR+KL+VITGLSGSGKSSLAFDTLYAEGQRRYVESLS+YARQ
Sbjct: 7 ISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYARQ 66
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
FL M KP+ D I+G+ PAI+IEQK S NPRSTVGT TE+Y+YLRLLYARVG P
Sbjct: 67 FLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYARVGRTYSPVS 126
Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
+K + +V+ +L PEG++ +L I + LE QGF R ++GE
Sbjct: 127 GEEVKKHSTEDIVNCMLSHPEGTRYTVLTPIRLREDRTLQQQLEIDLKQGFNRVEVNGEM 186
Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRS--DLQQRLAESFETALELSGGIVVVAPMEGDG 241
+ + + + + ++VDR V + D RL +S ETA+ G ++ DG
Sbjct: 187 KRIDEYKPVAGDE---VYLLVDRMAVANTKDAISRLTDSAETAMYEGDGTCMLRFYLPDG 243
Query: 242 EEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSL 301
++++ + G + E ++FSFN+P GACP C+G G D V+ + +LS+
Sbjct: 244 TTRLYNFSTKFEADGITFEEPNDQMFSFNSPIGACPVCEGFGKVIGIDEHLVVPNRSLSV 303
Query: 302 AQGAIRGW-DQKNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSGRTEIEFKYI 360
+GAI W +K + L A+ +DF + TP+ +L+ + + + G+ F I
Sbjct: 304 YEGAIVCWRGEKMGEWKDELIHNADKFDFPIFTPYYELTDEQRRTLWEGNQY----FHGI 359
Query: 361 NDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNV 420
ND F +L E +Y+ R LA+Y C C GTRLK EA V
Sbjct: 360 ND----------FFKMLE--ENQYKI----QYRVMLARYRGKTICPKCHGTRLKPEAGYV 403
Query: 421 FINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNLS 480
++ ++ +V+L I + FF L L + +A +++ EIN R++FL++VGL YL L+
Sbjct: 404 RVDGKSISELVDLPITELKEFFDHLNLNEHDSNVARRILIEINSRIRFLIDVGLGYLTLN 463
Query: 481 RSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTV 540
R + +LSGGE+QRI LA+ +G+ LVG +Y+LDEPSIGLH RD +RL++ L L+ LGNTV
Sbjct: 464 RLSNSLSGGESQRINLATSLGSSLVGSLYILDEPSIGLHSRDTDRLIRVLRQLQELGNTV 523
Query: 541 LVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVP 600
+VVEHDE+ IR AD++IDIGP AG GG VV +G+++++ NS T +YL G ++I VP
Sbjct: 524 VVVEHDEEIIRAADYIIDIGPNAGRLGGEVVYQGDMKDLKKGSNSHTVRYLLGEEEIPVP 583
Query: 601 EQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTA 660
E R P + +EL GA NNLK V++ P+ + T VTGVSGSGKSTL+ D F++
Sbjct: 584 EHRRPWN--NYIELTGARENNLKGVNVKFPLNVMTVVTGVSGSGKSTLVRDIFYRALKRE 641
Query: 661 LNGATTATPAPYRSIQG-LEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719
L+ + P + SI G L + +DQ+PIG++ RSNP TY + IR+L+A
Sbjct: 642 LDECSD-RPGEFSSISGSLRDLRNIEFVDQNPIGKSSRSNPVTYIKAYDEIRKLWAEQPL 700
Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY 779
++ GY G FSFN GGRCE C+G+G I VEM F+ D+ + C+ C GKR+ +TLEV++
Sbjct: 701 AKQMGYTAGHFSFNSEGGRCEECKGEGTITVEMQFMADLVLECESCHGKRFKADTLEVKF 760
Query: 780 KGKTIDEVLDMTVEDAREFFDP--VPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRV 837
+ K I +VL+MTV A EFF I ++L L DVGL YI+LGQS++TLSGGE QRV
Sbjct: 761 QDKNIYDVLEMTVNQAVEFFTEHGQKKIVKRLLPLQDVGLGYIKLGQSSSTLSGGENQRV 820
Query: 838 KLARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTA 897
KLA LS+ TL+I DEPTTGLHFHDI++LL L G+++V+IEHN+DVIK A
Sbjct: 821 KLAFYLSQEKADPTLFIFDEPTTGLHFHDIRKLLDAFDALIRRGHSIVIIEHNMDVIKCA 880
Query: 898 DWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
D++IDLGPEGG GG I+A GTPE+VA AS+T +FLK L
Sbjct: 881 DYVIDLGPEGGDKGGNIVAVGTPEEVAACGASYTGQFLKEKL 922
Score = 57.0 bits (136), Expect = 5e-12
Identities = 37/112 (33%), Positives = 54/112 (48%), Gaps = 6/112 (5%)
Query: 610 KTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATP 669
K + +KGA NNLKN+D+ IP +TG+SGSGKS+L DT + + ++
Sbjct: 5 KHISIKGARVNNLKNIDVDIPRNKLVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSSYA 64
Query: 670 APYRSIQGLEHFDKV------IDIDQSPIGRTPRSNPATYTGIFTPIRELFA 715
+ D + I I+Q R PRS T T I+ +R L+A
Sbjct: 65 RQFLGRMSKPECDFIKGIPPAIAIEQKVNSRNPRSTVGTSTEIYEYLRLLYA 116