Pairwise Alignments

Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056

Subject, 946 a.a., excinuclease ABC subunit A (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  926 bits (2392), Expect = 0.0
 Identities = 493/937 (52%), Positives = 650/937 (69%), Gaps = 11/937 (1%)

Query: 4   IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
           I V GAR HNLK+I+  IPR+ L VITGLSGSGKSSLAFDT++AEGQRRY+E+ SAYAR 
Sbjct: 12  INVYGARVHNLKDIDAEIPRNSLTVITGLSGSGKSSLAFDTIFAEGQRRYIETFSAYARN 71

Query: 64  FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCPEH 123
           FL  +E+PDVD I GLSP ISIEQK+T+ NPRSTVGT TE+YDYLRLLYAR G       
Sbjct: 72  FLGNLERPDVDKITGLSPVISIEQKTTNKNPRSTVGTTTEIYDYLRLLYARAGIAYSYLS 131

Query: 124 QVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDGET 183
              +   T  Q++D +L+  +G K+ LLA +V+ RKG + +  E +  +G++  RIDGE 
Sbjct: 132 GEEMVKYTEEQILDLILKDYKGKKIYLLAPLVRSRKGHYKELFEQVRKKGYLYVRIDGEL 191

Query: 184 CDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVVAPMEGDGEE 243
            ++T   KL+ +K H IEV++D+  V     +RL +S  TA+    G++++   + +   
Sbjct: 192 REVTHGMKLDRYKNHDIEVVIDKLIVAEKDDKRLKQSVATAMRQGDGLLMILDAQTESVR 251

Query: 244 QIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQ 303
             +S    CP  G S RE  P  FSFN+P GACP C GLGV    D D+VI D  LS+ +
Sbjct: 252 H-YSKRLMCPVTGLSYREPAPHNFSFNSPQGACPKCKGLGVVNQIDVDKVIPDRELSIYE 310

Query: 304 GAIRGWDQ-KNFYYFQMLTALAEHYDFDVHTPFNKLSKKIQEIILHGSG-RTEIEFKYIN 361
           GAI    + KN   F  + AL E Y+  + TP  +LS    E IL+GS  R +I+   I 
Sbjct: 311 GAIAPLGKYKNAMIFWQIGALLEKYEATLKTPVKELSDDAVEEILYGSDDRIKIKSSLIG 370

Query: 362 DRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVF 421
              D  +    +EG++  ++       S + ++   ++     C  C G RL  EA +  
Sbjct: 371 TSSDYFVT---YEGVVKYIQMLQEKDASATAQKWAEQFARTTVCPECKGARLNKEALHFR 427

Query: 422 INDTALPTIVELSIADALTFFQELK--LEGQRAQIAEKVMKEINDRLQFLVNVGLNYLNL 479
           I+D  +  +  + I +   +   +   L  ++ +IA +++KEI  RL+FL++VGL+YL L
Sbjct: 428 IHDKNINDLANMDINELYDWLMNVDQFLSDKQKKIAAEILKEIRTRLKFLLDVGLDYLAL 487

Query: 480 SRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNT 539
           +RS+ +LSGGE+QRIRLA+QIG+ LV V+Y+LDEPSIGLHQRDN RL+++L  LR++GN+
Sbjct: 488 NRSSVSLSGGESQRIRLATQIGSQLVNVLYILDEPSIGLHQRDNLRLIRSLKELRDMGNS 547

Query: 540 VLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAV 599
           V+VVEHD+D +  AD+VID+GP AG  GG VV  G   E++    ++T QYL+G  KI V
Sbjct: 548 VIVVEHDKDMMLAADYVIDMGPKAGRLGGEVVFSGTPSEMLQT-ETMTSQYLNGEMKIEV 606

Query: 600 PEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHT 659
           P +R  K   K++ LKGA GNNLKNVD+  P+G   CVTGVSGSGKSTLIN+T   I   
Sbjct: 607 PAKRR-KGNGKSIWLKGAKGNNLKNVDVEFPLGKLICVTGVSGSGKSTLINETLQPILSQ 665

Query: 660 ALNGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719
                +   P  Y SI+GLE+ DKV+D+DQSPIGRTPRSNPATYTG+F+ IR LF    E
Sbjct: 666 KFY-RSLQDPLEYDSIEGLENIDKVVDVDQSPIGRTPRSNPATYTGVFSDIRNLFVSLPE 724

Query: 720 SRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY 779
           ++ RGY+PGRFSFNV GGRCEAC G+G   +EM+FLPDVYVPC+VC GKRYNRETLEVR+
Sbjct: 725 AKIRGYKPGRFSFNVSGGRCEACTGNGYKTIEMNFLPDVYVPCEVCHGKRYNRETLEVRF 784

Query: 780 KGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKL 839
           KGK+I +VLDMT+  A EFF+ VP I  K++ L DVGL YI+LGQS+TTLSGGE+QRVKL
Sbjct: 785 KGKSIADVLDMTINRAVEFFENVPQILNKIKVLQDVGLGYIKLGQSSTTLSGGESQRVKL 844

Query: 840 ARELSKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADW 899
           A ELSKRDTGKTLYILDEPTTGLHF DI+ L+ VL++L D GNTV+VIEHNLDVIK AD+
Sbjct: 845 ATELSKRDTGKTLYILDEPTTGLHFEDIRVLMGVLNKLVDKGNTVIVIEHNLDVIKMADY 904

Query: 900 IIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLK 936
           IID+GPEGG+GGG++++ GTPE+VA+ +  +T +FL+
Sbjct: 905 IIDMGPEGGKGGGVLLSYGTPEEVAKSQKGYTPKFLR 941