Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 1983 a.a., excinuclease ABC subunit A from Burkholderia phytofirmans PsJN
Score = 639 bits (1647), Expect = 0.0
Identities = 395/999 (39%), Positives = 549/999 (54%), Gaps = 90/999 (9%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
I++RGAR HNLKN++L + ++ V+TG SGSGKSSL FDTLYAEGQRRYVE+ SAYARQ
Sbjct: 29 IKIRGARQHNLKNVDLDVRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYARQ 88
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGE--PRCP 121
FL M++P VD ++G+ PAI+I+Q + + RSTVGT+TE+ D+L+LLYAR E R
Sbjct: 89 FLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAELFDRKT 148
Query: 122 EHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKE--RKGEHVKTLENLAAQGFIRARI 179
HQV + T + ++LE ++ L+ T E + + L+A G+ R +
Sbjct: 149 AHQV--RHDTPETIYAELLERTAQNEPRLVVTFPVELPESASEQEVEQWLSASGYTRVQA 206
Query: 180 DGETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIVVV----- 234
E T KL ++V+ DRF++RS +QR+ E+ E +L+ GG V +
Sbjct: 207 QREVDSPTGKRKL-------LDVVADRFRLRSVDKQRVVEAIEASLKRGGGRVNIYVLPA 259
Query: 235 ---APMEGDGEEQI--FSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQQYFD 289
P + E QI FS P + +P LFSFN+ GAC C G G D
Sbjct: 260 SPEGPESQEAEPQIWRFSTGLHSPESDLRYADPQPALFSFNSAYGACEVCRGFGRVIGVD 319
Query: 290 PDRVIQDANLSLAQGAIRGWDQKNFYYFQM-LTALAEHYDFDVHTPFNKLSKKIQEIILH 348
VI DA +L GAI+ + Q L A D TP+ +L+ ++ +++
Sbjct: 320 LGLVIPDARKTLRDGAIKPMQTPAWKECQDDLMRYAAKADIRRGTPWGELTDAERDWVIN 379
Query: 349 GSGRTEIEFKYINDRGDIRLKKHPFEGILHNLERRYRDTESNSVREELAKYISNKPCSSC 408
GS +++ + G+ E +R L+KY S PC +C
Sbjct: 380 GSPDWNGKWQ------------SHWYGVKRFFEYLESKAYKMHIRVLLSKYRSYTPCETC 427
Query: 409 DGTRLKIEA-----------------------RNVFINDTALPTIVELSIADALT----- 440
G RLK E+ R V L + L++ D +
Sbjct: 428 GGARLKTESLLWRLGSKANADDVLPAAKRFLPRGVDWTRGQLEALPGLTVHDLMLMPIER 487
Query: 441 ---FFQELKLEGQRAQIAEKVM-KEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRL 496
FF E+ L A K++ E+ RL++L +VGL YL L R + TLSGGE QRI L
Sbjct: 488 IRHFFDEISLPSALLDDALKLLLAEVRTRLKYLCDVGLGYLTLDRQSRTLSGGEVQRINL 547
Query: 497 ASQIGAGLVGVMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHV 556
+ +G L ++VLDEPSIGLH RD R+++ + LR+ GNT++VVEHD + AD +
Sbjct: 548 TTALGTSLTKTLFVLDEPSIGLHPRDLNRIVEAMHRLRDAGNTLVVVEHDPSVMLAADRL 607
Query: 557 IDIGPGAGVHGGMVVAEGNVEEIIANPNSLTGQYLSGVKKIAVP---EQRTPKDAKKTVE 613
ID+GPG G GG ++ +G E I + +LTG+YL G + +A QR +
Sbjct: 608 IDMGPGPGERGGSIIYDG-APEAIRSSGTLTGEYLGGRRHVADAAHWSQRPVDATTPRIV 666
Query: 614 LKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYR 673
L+GA +NL +V + IP+ CVTGVSGSGKSTL+ D + A G T +P +R
Sbjct: 667 LEGATEHNLLDVTVEIPLERLVCVTGVSGSGKSTLLQDVLYP-AMARHFGLATESPGAFR 725
Query: 674 SIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFN 733
S+ G + V+ +DQSPIG+T RSNPA+Y G F IR+LFA ++ RGY PG FSFN
Sbjct: 726 SLSGADQVTDVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPLAQQRGYGPGMFSFN 785
Query: 734 VRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRY------KGKTIDEV 787
GRC C G G +EM FL DVY+ C C G+RY E LEV+ + +I +V
Sbjct: 786 SGEGRCPTCGGSGFEHIEMQFLSDVYLRCPDCDGRRYRAELLEVKIERGEPARALSIADV 845
Query: 788 LDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLAREL---- 843
L++TV +A +F + R LQ ++DVGL Y++LGQ TLSGGEAQR+KLA L
Sbjct: 846 LELTVSEATTYFAKDAEVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAESA 905
Query: 844 -------SKRDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKT 896
+K+ K L++ DEPTTGLHF DI +L+ +L G++++VIEHNLDVI+
Sbjct: 906 QARTARSAKQAVAKRLFMFDEPTTGLHFDDIAKLMQAFGKLLASGHSLIVIEHNLDVIRA 965
Query: 897 ADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFL 935
ADW+IDLGPEGG GGG ++ GTPEDV SHT L
Sbjct: 966 ADWLIDLGPEGGDGGGRVLCAGTPEDVKTCSESHTGEAL 1004
Score = 541 bits (1394), Expect = e-157
Identities = 290/600 (48%), Positives = 383/600 (63%), Gaps = 54/600 (9%)
Query: 394 EELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQ 453
E+ + + ++PC C GTRL AR V + A+ + + +++D + L++ G+ A+
Sbjct: 1367 EQEPEGLVDEPCPDCAGTRLNPTARAVTFDTQAIVDVAQWTVSDTRAWIDTLEMTGRDAE 1426
Query: 454 IAEKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDE 513
IA V+ EI RLQFL VGL YL+L R+A +LSGGEAQRIRLA+Q+G+ L GV YVLDE
Sbjct: 1427 IARDVVSEIGSRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQGVCYVLDE 1486
Query: 514 PSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAE 573
P+IGLH RDN+ LL L L GNT++VVEHDED IR ADH+IDIGPGAG GG +VA+
Sbjct: 1487 PTIGLHPRDNQILLNALRKLGEKGNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLVAQ 1546
Query: 574 GNVEEIIANPNSLTGQYLSGV--------KKIAVPEQRTPKDAKKTVELKGAVGNNLKNV 625
G+V ++ A P+SLTGQ+L+ +++ P +RT + + + G +NL+NV
Sbjct: 1547 GSVADLSAQPDSLTGQFLAQPIVHPLQPRREVVAPGKRTAAVPENWLTVHGGKLHNLRNV 1606
Query: 626 DLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPAPYR------------ 673
+ IP+ VTGVSGSGKSTL D A+ + ++PA R
Sbjct: 1607 TVGIPLSRLVAVTGVSGSGKSTLARDVLMSNLLDAVGRSVLSSPATRRARAAAEEKPAAN 1666
Query: 674 -------------------------SIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFT 708
SI G E D+V+++DQ+PIG+TPRS PATY G++
Sbjct: 1667 RRSSVLARTAPRAPLNVTHAWQGCDSITGWETIDRVLEVDQTPIGKTPRSCPATYIGVWD 1726
Query: 709 PIRELFAGTQESRSRGYQPGRFSFNVRGGRCEACQGDGVIKVEMHFLPDVYVPCDVCKGK 768
IR+LFAGT E+R+RGY RFSFN GRC AC+G GV + M FLPDV VPCDVC G+
Sbjct: 1727 AIRKLFAGTLEARARGYTASRFSFNTGEGRCPACEGQGVRTIGMSFLPDVKVPCDVCHGQ 1786
Query: 769 RYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIARKLQTLMDVGLSYIRLGQSATT 828
R+N ETL V ++GK I +VL M +++A EFF P+ IA LQ + DVGL Y+ LGQ + T
Sbjct: 1787 RFNPETLAVTWRGKNIGDVLTMEIDEAVEFFAPITNIAHPLQLMKDVGLGYLTLGQPSPT 1846
Query: 829 LSGGEAQRVKLARELSK---------RDTGKTLYILDEPTTGLHFHDIQQLLSVLHRLRD 879
LSGGEAQR+KL ELSK + TLY+LDEPT GLH D+ +L+ VLHRL D
Sbjct: 1847 LSGGEAQRIKLVTELSKVRDDITRRGQKPPHTLYVLDEPTVGLHMADVAKLIRVLHRLAD 1906
Query: 880 HGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQIEASHTARFLKPLL 939
G++VVVIEH+LDVI ADWIIDLGPEGG GGG I+A PE ++++ ASHT L+P+L
Sbjct: 1907 GGHSVVVIEHDLDVIAEADWIIDLGPEGGVGGGAIVAATDPEGLSRVAASHTGAALRPVL 1966
Score = 209 bits (531), Expect = 2e-57
Identities = 117/316 (37%), Positives = 182/316 (57%), Gaps = 19/316 (6%)
Query: 2 DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYA 61
D + + AR HNLK++++ IP K VITG+SGSGKS+LAFD L+ EGQRRY+ESL+AYA
Sbjct: 1041 DVVRIVNAREHNLKSLDVDIPHGKFNVITGVSGSGKSTLAFDILFHEGQRRYLESLNAYA 1100
Query: 62 RQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVGEPRCP 121
R + +P+VD + G+ P ++IEQ+ + +STV T +EV+ +LRLLY ++G C
Sbjct: 1101 RSIVQPAGRPEVDAVYGIPPTVAIEQRLSRGGRKSTVATTSEVWHFLRLLYVKLGLQHCI 1160
Query: 122 EHQVPLKAQTISQMVDKVLELPEGSKMMLLATIVKERKGEHVKTLENLAAQGFIRARIDG 181
P+ +Q++ + ++L +G + LA +V RKG + + A+G R+DG
Sbjct: 1161 HDGTPVTSQSVESIAAQLLRDHKGQHVGFLAPLVVNRKGVYTDLAKWAKARGNTHLRVDG 1220
Query: 182 ETCDLTDPPKLELHKKHTIEVIVDRFKVRSDLQQRLAESFETALELSGGIV-VVAPMEG- 239
E + PKL+ ++HTIE+ V V D + L + + LE+ G++ ++AP++G
Sbjct: 1221 EFVPVDPWPKLDRFREHTIELPVADLVVSPDNETELRRALDQTLEVGKGVMHLLAPLDGL 1280
Query: 240 ------------DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGV--- 284
G ++ S ACP CG S EL+PR+FS+N+ G C TC G G+
Sbjct: 1281 HDAISGGRATAKLGAVKVLSTKRACPTCGTSYPELDPRMFSYNSKHGWCTTCVGTGLALT 1340
Query: 285 --QQYFDPDRVIQDAN 298
Q+ D ++ D N
Sbjct: 1341 REQRAVYDDTIVVDDN 1356
Score = 138 bits (347), Expect = 4e-36
Identities = 89/249 (35%), Positives = 126/249 (50%), Gaps = 41/249 (16%)
Query: 727 PGRFSFNVRGGRCEACQGDGV-IKVEMHFLPD-------------------------VYV 760
P FS+N + G C C G G+ + E + D V
Sbjct: 1317 PRMFSYNSKHGWCTTCVGTGLALTREQRAVYDDTIVVDDNRGREQSLPSEEQEPEGLVDE 1376
Query: 761 PCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFFDPVPVIAR------------- 807
PC C G R N V + + I +V TV D R + D + + R
Sbjct: 1377 PCPDCAGTRLNPTARAVTFDTQAIVDVAQWTVSDTRAWIDTLEMTGRDAEIARDVVSEIG 1436
Query: 808 -KLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPTTGLHFHD 866
+LQ L +VGL Y+ L ++A +LSGGEAQR++LA +L G Y+LDEPT GLH D
Sbjct: 1437 SRLQFLEEVGLGYLSLDRAAPSLSGGEAQRIRLAAQLGSNLQG-VCYVLDEPTIGLHPRD 1495
Query: 867 IQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGTPEDVAQI 926
Q LL+ L +L + GNT+VV+EH+ D I+ AD IID+GP G+ GG ++A+G+ D++
Sbjct: 1496 NQILLNALRKLGEKGNTLVVVEHDEDTIRRADHIIDIGPGAGKRGGTLVAQGSVADLSAQ 1555
Query: 927 EASHTARFL 935
S T +FL
Sbjct: 1556 PDSLTGQFL 1564
Score = 134 bits (338), Expect = 5e-35
Identities = 92/286 (32%), Positives = 141/286 (49%), Gaps = 50/286 (17%)
Query: 405 CSSCDGTRLKIEARNVFIND------TALPTIVELSIADALTFFQELKLEGQRAQIAEKV 458
C CDG R + E V I ++ ++EL++++A T+F +
Sbjct: 814 CPDCDGRRYRAELLEVKIERGEPARALSIADVLELTVSEATTYFAK-------------- 859
Query: 459 MKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAG------------LVG 506
E+ LQ +V+VGL Y+ L + TLSGGEAQR++LA + +
Sbjct: 860 DAEVLRVLQPIVDVGLEYVKLGQPVPTLSGGEAQRLKLAGFLAESAQARTARSAKQAVAK 919
Query: 507 VMYVLDEPSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVH 566
+++ DEP+ GLH D +L+Q L G++++V+EH+ D IR AD +ID+GP G
Sbjct: 920 RLFMFDEPTTGLHFDDIAKLMQAFGKLLASGHSLIVIEHNLDVIRAADWLIDLGPEGGDG 979
Query: 567 GGMVVAEGNVEEIIANPNSLTGQYL---------------SGV---KKIAVPEQRTPKDA 608
GG V+ G E++ S TG+ L G+ K ++ R +
Sbjct: 980 GGRVLCAGTPEDVKTCSESHTGEALLQYDRAMGAAAEPASQGIPLQKALSAARARRAIEG 1039
Query: 609 KKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFF 654
+ V + A +NLK++D+ IP G F +TGVSGSGKSTL D F
Sbjct: 1040 EDVVRIVNAREHNLKSLDVDIPHGKFNVITGVSGSGKSTLAFDILF 1085
Score = 57.8 bits (138), Expect = 7e-12
Identities = 44/147 (29%), Positives = 65/147 (44%), Gaps = 31/147 (21%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYA---EGQRRYVESLSAY 60
+ V G + HNL+N+ + IP +L+ +TG+SGSGKS+LA D L + + R V S A
Sbjct: 1593 LTVHGGKLHNLRNVTVGIPLSRLVAVTGVSGSGKSTLARDVLMSNLLDAVGRSVLSSPAT 1652
Query: 61 ARQFLSLMEKP------------------DVDHI----------EGLSPAISIEQKSTSH 92
R + EKP +V H E + + ++Q
Sbjct: 1653 RRARAAAEEKPAANRRSSVLARTAPRAPLNVTHAWQGCDSITGWETIDRVLEVDQTPIGK 1712
Query: 93 NPRSTVGTITEVYDYLRLLYARVGEPR 119
PRS T V+D +R L+A E R
Sbjct: 1713 TPRSCPATYIGVWDAIRKLFAGTLEAR 1739
Score = 57.0 bits (136), Expect = 1e-11
Identities = 39/115 (33%), Positives = 57/115 (49%), Gaps = 6/115 (5%)
Query: 611 TVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAHTALNGATTATPA 670
T++++GA +NLKNVDL + G T VTG SGSGKS+L+ DT + +A
Sbjct: 28 TIKIRGARQHNLKNVDLDVRTGEMTVVTGPSGSGKSSLVFDTLYAEGQRRYVETFSAYAR 87
Query: 671 PYRSIQGLEHFDKV------IDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQE 719
+ D+V I IDQ+ R+ RS T T + ++ L+A E
Sbjct: 88 QFLDRMDRPQVDRVDGVPPAIAIDQTNPVRSSRSTVGTMTELNDHLKLLYARAAE 142
Score = 57.0 bits (136), Expect = 1e-11
Identities = 39/140 (27%), Positives = 62/140 (44%), Gaps = 32/140 (22%)
Query: 3 KIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYAR 62
+I + GA HNL ++ + IP ++L+ +TG+SGSGKS+L D LY A AR
Sbjct: 664 RIVLEGATEHNLLDVTVEIPLERLVCVTGVSGSGKSTLLQDVLY-----------PAMAR 712
Query: 63 QFLSLMEKP----DVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARV--- 115
F E P + + ++ + ++Q RS + +D +R L+A+
Sbjct: 713 HFGLATESPGAFRSLSGADQVTDVVFVDQSPIGKTARSNPASYVGAFDEIRKLFAKAPLA 772
Query: 116 --------------GEPRCP 121
GE RCP
Sbjct: 773 QQRGYGPGMFSFNSGEGRCP 792
Score = 30.4 bits (67), Expect = 0.001
Identities = 15/46 (32%), Positives = 21/46 (45%), Gaps = 5/46 (10%)
Query: 240 DGEEQIFSANFACPHCGYSMRELEPRLFSFNNPAGACPTCDGLGVQ 285
D ++F+ GY+ FSFN G CP C+G GV+
Sbjct: 1726 DAIRKLFAGTLEARARGYTASR-----FSFNTGEGRCPACEGQGVR 1766