Pairwise Alignments
Query, 940 a.a., UvrABC system protein A from Vibrio cholerae E7946 ATCC 55056
Subject, 883 a.a., excinuclease ABC subunit A from Burkholderia phytofirmans PsJN
Score = 489 bits (1259), Expect = e-142
Identities = 286/736 (38%), Positives = 400/736 (54%), Gaps = 72/736 (9%)
Query: 267 FSFNNPAGACPTCDGLGVQQYFDPDRVIQDANLSLAQGAIRGWDQKNFYYFQMLTALAEH 326
FS N P GACPTC GLG ++ D +L++ + AI W + Q L +
Sbjct: 145 FSPNMPQGACPTCHGLGHVYEVTEAIMVPDPSLTIRERAIASWPPA--WQGQNLRDILVS 202
Query: 327 YDFDVHTPFNKLSKKIQEIILHGSGRTEIE----FKYINDRGDIRLKKHP-----FEGIL 377
+DV P+ L ++ ++ IL + F R ++ K P F G
Sbjct: 203 MGYDVDRPWKDLPRRDRDWILFTEETPTVPVYAGFTPAETRAALKRKLEPSYMGTFTGAR 262
Query: 378 HNLERRYRDTESNSVREELAKYISNKPCSSCDGTRLKIEARNVFINDTALPTIVELSIAD 437
+ + +T+S +R+ +++++ KPC +C G RLK EA +V + +++ +
Sbjct: 263 RYVLHTFANTQSALMRKRVSRFMEGKPCPTCHGKRLKPEALSVTFAGVDIGEFMQMPLDQ 322
Query: 438 ALTFFQELKLEGQRAQIA------------------------------------------ 455
+ + RA +A
Sbjct: 323 LAALLEPIAQGDFRAHVAGAGTDREATRRDRAERAASGRAVHSVSPDVRRTSALSEEKRL 382
Query: 456 --EKVMKEINDRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVGVMYVLDE 513
+++ + RL+ L +GL YL L R+ TLS GE QR+RLA+Q+ + L GV+YVLDE
Sbjct: 383 AAQRLAGGVMARLRQLRGLGLGYLTLDRATPTLSAGELQRLRLATQLSSLLFGVVYVLDE 442
Query: 514 PSIGLHQRDNERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAE 573
PS GLH D++ L L LR+ GN+V VVEHD D +R A ++D+GP AG GG V+
Sbjct: 443 PSAGLHPADSQALYDALDRLRDAGNSVFVVEHDLDLMRRAQWLVDVGPDAGERGGRVLYS 502
Query: 574 GNVEEIIANPNSLTGQYLSGVKKIAVPEQRTPKDAKKTVELKGAVGNNLKNVDLSIPVGL 633
G + + S T +YL +I P R ++A +EL+G +NL VD IP+G+
Sbjct: 503 GEPDGLRQIAESRTARYL--FDEIPAPGSRA-REASDWLELQGVHRHNLHGVDARIPLGV 559
Query: 634 FTCVTGVSGSGKSTLINDTFFKIA---------HTALNGATTATPAPYRSIQG-----LE 679
T VTG+SGSGKS+L+ T ++ A T PA G ++
Sbjct: 560 LTAVTGISGSGKSSLVAQTLPELVLLHLGHEPEDDAAESGTGEGPAVIEVTGGHLAGDVD 619
Query: 680 HFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESRSRGYQPGRFSFNVRGGRC 739
+++ +DQ PIGRTPRSN ATYTG+F +R+LFA T ++R R Y GRFSFNV GRC
Sbjct: 620 AVQRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLFAATPDARRRRYDAGRFSFNVAKGRC 679
Query: 740 EACQGDGVIKVEMHFLPDVYVPCDVCKGKRYNRETLEVRYKGKTIDEVLDMTVEDAREFF 799
E C+G+G + VE+ F+P VY PC C G RYN TL+V +K + I EVL MTV++A EFF
Sbjct: 680 ETCEGEGFVSVELLFMPSVYAPCPTCHGARYNEATLKVLWKDRNIAEVLQMTVDEASEFF 739
Query: 800 DPVPVIARKLQTLMDVGLSYIRLGQSATTLSGGEAQRVKLARELSKRDTGKTLYILDEPT 859
+AR LQ L D+GL Y+RLGQ AT LSGGEAQR+KLA EL + G++LY+LDEPT
Sbjct: 740 AGEDAVARPLQLLRDIGLGYLRLGQPATELSGGEAQRIKLATELQRSQRGRSLYVLDEPT 799
Query: 860 TGLHFHDIQQLLSVLHRLRDHGNTVVVIEHNLDVIKTADWIIDLGPEGGQGGGLIIAEGT 919
TGLH D +LL L RL D GNTVV+IEH++ + ADW+ID+GP G GG ++A GT
Sbjct: 800 TGLHASDADRLLVQLQRLVDAGNTVVMIEHDMRAVAQADWVIDVGPGAGDAGGRVVAAGT 859
Query: 920 PEDVAQIEASHTARFL 935
P VAQ+ S TA FL
Sbjct: 860 PPQVAQVPDSRTAPFL 875
Score = 129 bits (325), Expect = 6e-34
Identities = 59/113 (52%), Positives = 88/113 (77%)
Query: 4 IEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYAEGQRRYVESLSAYARQ 63
++VRGAR HNLK++++ IPR+ L+V +G+SGSGKSSLAF TLYAE QRRY ES++ YAR+
Sbjct: 19 VQVRGAREHNLKDVDVNIPRNALVVFSGVSGSGKSSLAFGTLYAEAQRRYFESVAPYARR 78
Query: 64 FLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYARVG 116
+ PDVD I+GL PA++++Q+ + N RS+VG++T + +R++Y+R G
Sbjct: 79 LIDQAGVPDVDSIDGLPPAVALQQQRGASNARSSVGSVTTLSSLVRMMYSRAG 131
Score = 129 bits (324), Expect = 8e-34
Identities = 76/190 (40%), Positives = 108/190 (56%), Gaps = 15/190 (7%)
Query: 404 PCSSCDGTRLKIEARNVFINDTALPTIVELSIADALTFFQELKLEGQRAQIAEKVMKEIN 463
PC +C G R V D + ++++++ +A FF G+ A +
Sbjct: 701 PCPTCHGARYNEATLKVLWKDRNIAEVLQMTVDEASEFFA-----GEDA---------VA 746
Query: 464 DRLQFLVNVGLNYLNLSRSAETLSGGEAQRIRLASQIGAGLVG-VMYVLDEPSIGLHQRD 522
LQ L ++GL YL L + A LSGGEAQRI+LA+++ G +YVLDEP+ GLH D
Sbjct: 747 RPLQLLRDIGLGYLRLGQPATELSGGEAQRIKLATELQRSQRGRSLYVLDEPTTGLHASD 806
Query: 523 NERLLQTLTHLRNLGNTVLVVEHDEDAIRMADHVIDIGPGAGVHGGMVVAEGNVEEIIAN 582
+RLL L L + GNTV+++EHD A+ AD VID+GPGAG GG VVA G ++
Sbjct: 807 ADRLLVQLQRLVDAGNTVVMIEHDMRAVAQADWVIDVGPGAGDAGGRVVAAGTPPQVAQV 866
Query: 583 PNSLTGQYLS 592
P+S T +L+
Sbjct: 867 PDSRTAPFLA 876
Score = 60.1 bits (144), Expect = 6e-13
Identities = 36/126 (28%), Positives = 60/126 (47%), Gaps = 8/126 (6%)
Query: 2 DKIEVRGARTHNLKNINLTIPRDKLIVITGLSGSGKSSLAFDTLYA--------EGQRRY 53
D +E++G HNL ++ IP L +TG+SGSGKSSL TL E +
Sbjct: 536 DWLELQGVHRHNLHGVDARIPLGVLTAVTGISGSGKSSLVAQTLPELVLLHLGHEPEDDA 595
Query: 54 VESLSAYARQFLSLMEKPDVDHIEGLSPAISIEQKSTSHNPRSTVGTITEVYDYLRLLYA 113
ES + + + ++ + + ++QK PRS + T T ++D++R L+A
Sbjct: 596 AESGTGEGPAVIEVTGGHLAGDVDAVQRLVQVDQKPIGRTPRSNLATYTGLFDHVRKLFA 655
Query: 114 RVGEPR 119
+ R
Sbjct: 656 ATPDAR 661
Score = 50.8 bits (120), Expect = 4e-10
Identities = 41/152 (26%), Positives = 66/152 (43%), Gaps = 18/152 (11%)
Query: 608 AKKTVELKGAVGNNLKNVDLSIPVGLFTCVTGVSGSGKSTLINDTFFKIAH------TAL 661
A V+++GA +NLK+VD++IP +GVSGSGKS+L T + A A
Sbjct: 15 ASGLVQVRGAREHNLKDVDVNIPRNALVVFSGVSGSGKSSLAFGTLYAEAQRRYFESVAP 74
Query: 662 NGATTATPAPYRSIQGLEHFDKVIDIDQSPIGRTPRSNPATYTGIFTPIRELFAGTQESR 721
A + ++ + + Q RS+ + T + + +R ++ SR
Sbjct: 75 YARRLIDQAGVPDVDSIDGLPPAVALQQQRGASNARSSVGSVTTLSSLVRMMY-----SR 129
Query: 722 SRGYQPGR-------FSFNVRGGRCEACQGDG 746
+ Y G+ FS N+ G C C G G
Sbjct: 130 AGAYPAGQPMLYAEDFSPNMPQGACPTCHGLG 161
Score = 26.2 bits (56), Expect = 0.010
Identities = 11/24 (45%), Positives = 13/24 (54%)
Query: 260 RELEPRLFSFNNPAGACPTCDGLG 283
R + FSFN G C TC+G G
Sbjct: 663 RRYDAGRFSFNVAKGRCETCEGEG 686