Pairwise Alignments

Query, 1226 a.a., methionine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 1246 a.a., B12-dependent methionine synthase (RefSeq) from Shewanella amazonensis SB2B

 Score = 1657 bits (4290), Expect = 0.0
 Identities = 832/1229 (67%), Positives = 981/1229 (79%), Gaps = 13/1229 (1%)

Query: 6    RQQLEQQLKQRILLIDGGMGTMIQSYKLQEEDYRGARFVDWHCDLKGNNDLLVLTQPQII 65
            +Q+L + L  RIL++DG MGTMIQ +KL+EE YRG+RF DWHCD+KGNNDLLVLTQP+II
Sbjct: 18   QQRLNEDLSTRILILDGAMGTMIQGHKLEEEHYRGSRFADWHCDVKGNNDLLVLTQPEII 77

Query: 66   KEIHSAYLEAGADILETNTFNSTTIAMADYDMQSLSAEINFAAAKLAREVADEWTAKDPS 125
            K IH  YL AGADI+ETNTFN+TT+AMADYDMQSLSAEIN   A++AREVADE  A+   
Sbjct: 78   KGIHREYLLAGADIIETNTFNATTVAMADYDMQSLSAEINLVGARIAREVADEVEAQT-G 136

Query: 126  RPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGLVEAYSESTRALIKGGSDLILIETIF 185
             PRYVAGVLGPTNRTCSISPDVNDPG+RN+ FD LV AY EST ALI+GG+D+I++ETIF
Sbjct: 137  IPRYVAGVLGPTNRTCSISPDVNDPGYRNIHFDDLVTAYRESTAALIEGGADIIMVETIF 196

Query: 186  DTLNAKACAFAVDSVFEELGISLPVMISGTITDASGRTLSGQTTEAFYNALRHVRPISFG 245
            DTLNAKA  FA++S+F+E+G+ LPVMISGTITDASGRTL+GQTTEAFYN+LRH++PIS G
Sbjct: 197  DTLNAKAALFAIESIFDEVGLRLPVMISGTITDASGRTLTGQTTEAFYNSLRHIKPISMG 256

Query: 246  LNCALGPDELRQYVEELSRISECYVSAHPNAGLPNAFGEYDLSAEEMAEHIAEWAQAGFL 305
            LNCALGP ELR YVEELSRISECYVSAHPNAGLPN FG YD + +EMA+ I +WA  G L
Sbjct: 257  LNCALGPKELRPYVEELSRISECYVSAHPNAGLPNEFGGYDETPKEMADIIVQWAIEGML 316

Query: 306  NLVGGCCGTTPEHIAAIAKAVEGVKPRALPDLKVECRLSGLEPLNIGPETLFVNVGERTN 365
            N+VGGCCGTTP+HI  I +AVE   PR LP+L V CRL+GLEPL I  ++LFVNVGERTN
Sbjct: 317  NIVGGCCGTTPDHIRVIREAVEKHAPRKLPELPVACRLAGLEPLTISADSLFVNVGERTN 376

Query: 366  VTGSARFKRLIKEEQYDEALDVAREQVENGAQIIDINMDEGMLDAEACMVRFLNLCASEP 425
            VTGSA+F +LIKE QY+ ALDVAR+QVENGAQIIDINMDEGMLD E  M  FLNL ASEP
Sbjct: 377  VTGSAKFLKLIKEGQYETALDVARDQVENGAQIIDINMDEGMLDGEEVMTTFLNLVASEP 436

Query: 426  EISKVPVMVDSSKWEVIEAGLKCIQGKGIVNSISLKEGKEKFIAQAKLVRRYGAAVIVMA 485
            EISKVP+M+DSSKWEVIEAGLKC+QGK IVNSISLKEG+ KFI QA LV+RYGAA I+MA
Sbjct: 437  EISKVPIMIDSSKWEVIEAGLKCVQGKCIVNSISLKEGEAKFIEQATLVKRYGAAAIIMA 496

Query: 486  FDEVGQADTRERKLEICRRAYHILVDEVGFPPEDIIFDPNIFAVATGIDEHNNYALDFIN 545
            FDE GQADTR RK+EIC RAY ILVD+VGFPPEDIIFDPNIFAVATGI+EH+NYA+DFI 
Sbjct: 497  FDETGQADTRARKIEICTRAYRILVDKVGFPPEDIIFDPNIFAVATGIEEHDNYAVDFIE 556

Query: 546  AVADIKRELPHAMISGGVSNVSFSFRGNNYVREAIHAVFLYHCFKHGMDMGIVNAGQLEI 605
            AV DIK  LPHAMISGGVSNVSFSFRGNN VREAIHAVFLYH  K GMDMGIVNAGQL I
Sbjct: 557  AVRDIKATLPHAMISGGVSNVSFSFRGNNPVREAIHAVFLYHAIKEGMDMGIVNAGQLAI 616

Query: 606  YDNVPLKLREAVEDVILN-----RRSDGTERLLEIAEAYR---ENSVGKEEDASALEWRA 657
            YD++P +L+E VE V+LN       S  TE+LLEIAE YR    +  GK+ED   L+WR+
Sbjct: 617  YDDIPAELKERVEAVVLNLPCPVEDSTNTEQLLEIAEKYRGGGGSGAGKKED---LQWRS 673

Query: 658  WPVAKRLEHALVKGITEFIVQDTEEARQQASKPLEVIEGPLMDGMNVVGDLFGEGKMFLP 717
             PV KRLEHALVKGITEFI  DTEEARQQA++PL+VIEGPLMDGMNVVGDLFGEGKMFLP
Sbjct: 674  LPVNKRLEHALVKGITEFIDADTEEARQQATRPLDVIEGPLMDGMNVVGDLFGEGKMFLP 733

Query: 718  QVVKSARVMKQAVAYLEPFINAQKSGSTSNGKILLATVKGDVHDIGKNIVGVVLQCNNFE 777
            QVVKSARVMK+AVAYL PFI A+K    SNGK+L+ TVKGDVHDIGKNIVGVVL CN +E
Sbjct: 734  QVVKSARVMKKAVAYLNPFIEAEKVAGQSNGKVLMVTVKGDVHDIGKNIVGVVLACNGYE 793

Query: 778  IIDLGVMVPCEQILKVAREQNVDIIGLSGLITPSLDEMVHVAKEMERQGFELPLLIGGAT 837
            +IDLGVMVP E+I++VA+++ VDIIG+SGLITPSLDEMVH  K  ER+G  LP +IGGAT
Sbjct: 794  VIDLGVMVPVEKIVEVAKKEQVDIIGMSGLITPSLDEMVHNVKTFEREGLTLPAIIGGAT 853

Query: 838  TSKAHTAVKIEQNYHAPVVYVNNASRAVGVCTSLLSDEQRPGFIERLDLDYERTRDQHAR 897
             SK HTAVKI  +Y    +Y+ +ASRAV + + L+++E R   I+    +Y+  R++   
Sbjct: 854  CSKIHTAVKIAPHYPHGAIYIPDASRAVPMVSKLINEETRAATIKATYDEYDVMREKRLS 913

Query: 898  KTPKSRPVTLEQARANKAALDWANYTPPAPAKPGVHVFENIALATLRPYIDWTPFFMTWS 957
            +  +   +++E AR N+  LDWANY P  P K G+ VFE+  L  L   IDWTPFF  W 
Sbjct: 914  QAKRKEIISIEAARENRCQLDWANYQPKVPNKLGIQVFEDYPLDDLVDRIDWTPFFRAWE 973

Query: 958  LMGKYPAILEHEEVGEEAKRLFHDANALLDKVEREGLLKASGMCALFPAASVG-DDIEVY 1016
            L G +P ILE E VGEEA++LF DA A+L  +  E  L A G+  LFPA +V  DDIE+Y
Sbjct: 974  LHGHFPRILEDEVVGEEARKLFADAKAMLQTIIDEKWLTAKGVIGLFPANTVNHDDIELY 1033

Query: 1017 SDESRTQVAHVLYNLRQQTEKPKGANYCLSDYVAPKESGKRDWIGAFAVTGGIGERALAD 1076
            +DESR+QV    ++LR Q E+    N+CLSD+VAPK+SG  D+ G FAV  G G      
Sbjct: 1034 TDESRSQVLMTTHHLRMQIERVGNDNFCLSDFVAPKDSGVVDYTGGFAVCAGHGIDEHLA 1093

Query: 1077 AYKAQGDDYNAIMIQAVADRLAEAFAEYLHEKVRKEIWGYASDENLSNDDLIRERYQGIR 1136
             ++A  DDYNAIM++ +ADRLAEAFAE +HE+VRKE WGYASDENL N+ LIRE+Y+GIR
Sbjct: 1094 RFEANHDDYNAIMLKVLADRLAEAFAERMHERVRKEFWGYASDENLDNEALIREKYRGIR 1153

Query: 1137 PAPGYPACPEHTEKATLWQMLNVEETIGMSLTTSYAMWPGASVSGWYFSHPDSRYFAVAQ 1196
            PAPGYPACP+HTEK  LW +L   E I +++T S+AM+P A+VSGWYF+HP++RYF V  
Sbjct: 1154 PAPGYPACPDHTEKGLLWDLLKPNECIDLNITESFAMYPTAAVSGWYFAHPEARYFGVTN 1213

Query: 1197 IQPDQLHSYAERKGWRLEEAEKWLAPNLD 1225
            I  DQ+  YA RKG  + E EKWLAP LD
Sbjct: 1214 IGRDQVEDYARRKGMTVAETEKWLAPILD 1242