Pairwise Alignments

Query, 1226 a.a., methionine synthase from Vibrio cholerae E7946 ATCC 55056

Subject, 1240 a.a., B12-dependent methionine synthase (RefSeq) from Shewanella loihica PV-4

 Score = 1594 bits (4128), Expect = 0.0
 Identities = 799/1231 (64%), Positives = 964/1231 (78%), Gaps = 12/1231 (0%)

Query: 3    KEVRQQLEQQLKQRILLIDGGMGTMIQSYKLQEEDYRGARFVDWHCDLKGNNDLLVLTQP 62
            +++   +  +L + IL++DG MGTMIQ++KL+E D+RG RF  W CDLKGNNDLLVLTQP
Sbjct: 11   RQINDAIRARLNKEILILDGAMGTMIQNHKLEEADFRGERFKQWPCDLKGNNDLLVLTQP 70

Query: 63   QIIKEIHSAYLEAGADILETNTFNSTTIAMADYDMQSLSAEINFAAAKLAREVADEWTAK 122
            ++IK+IH  YL AGADI+ETNTFN+T +AMADY+MQ LS EIN   A+LAR   DE  A 
Sbjct: 71   ELIKQIHRDYLLAGADIIETNTFNATQVAMADYEMQELSREINLEGARLARTACDE-VAA 129

Query: 123  DPSRPRYVAGVLGPTNRTCSISPDVNDPGFRNVTFDGLVEAYSESTRALIKGGSDLILIE 182
            +  R  YVAGVLGPTNRTCSISPDVNDPG+RN+ FD LVEAY EST+ALI+GG+D+I++E
Sbjct: 130  ESGRQCYVAGVLGPTNRTCSISPDVNDPGYRNIHFDDLVEAYIESTQALIEGGADIIMVE 189

Query: 183  TIFDTLNAKACAFAVDSVFEELGISLPVMISGTITDASGRTLSGQTTEAFYNALRHVRPI 242
            TIFDTLNAKA  FA++++F++LG  LPVMISGTITDASGRTL+GQTTEAFYN+LRHV+P+
Sbjct: 190  TIFDTLNAKAALFAIETLFDQLGQRLPVMISGTITDASGRTLTGQTTEAFYNSLRHVKPL 249

Query: 243  SFGLNCALGPDELRQYVEELSRISECYVSAHPNAGLPNAFGEYDLSAEEMAEHIAEWAQA 302
            S GLNCALGP ELR YVEELS+I+ECYVSAHPNAGLPN FG YD + E+MAE I  WA+ 
Sbjct: 250  SIGLNCALGPQELRPYVEELSKIAECYVSAHPNAGLPNEFGGYDETPEQMAEVIGPWAEE 309

Query: 303  GFLNLVGGCCGTTPEHIAAIAKAVEGVKPRALPDLKVECRLSGLEPLNIGPETLFVNVGE 362
            G LN++GGCCGTTP+HI AI  AV     R LPDL V CRLSGLEPL I  ++LFVNVGE
Sbjct: 310  GLLNIIGGCCGTTPDHIKAIRAAVIKHGARELPDLPVACRLSGLEPLTIDADSLFVNVGE 369

Query: 363  RTNVTGSARFKRLIKEEQYDEALDVAREQVENGAQIIDINMDEGMLDAEACMVRFLNLCA 422
            RTNVTGSA+F RLIK  +Y+EAL VAR+QVENGAQIIDINMDEGMLD    M +FLNL A
Sbjct: 370  RTNVTGSAKFLRLIKTGEYEEALSVARDQVENGAQIIDINMDEGMLDGVEVMQKFLNLIA 429

Query: 423  SEPEISKVPVMVDSSKWEVIEAGLKCIQGKGIVNSISLKEGKEKFIAQAKLVRRYGAAVI 482
            SEP+IS+VP+M+DSSKWEVIEAGLKCIQGKG+VNSISLKEG+ KFI QA LV+RYGAA I
Sbjct: 430  SEPDISRVPIMIDSSKWEVIEAGLKCIQGKGVVNSISLKEGEAKFIEQATLVKRYGAAAI 489

Query: 483  VMAFDEVGQADTRERKLEICRRAYHILVDEVGFPPEDIIFDPNIFAVATGIDEHNNYALD 542
            +MAFDEVGQADT  RK+EIC RAY +LVD+VGFPPEDIIFDPNIFA+ATGIDEH+NYA+D
Sbjct: 490  IMAFDEVGQADTMARKIEICTRAYRVLVDKVGFPPEDIIFDPNIFAIATGIDEHDNYAVD 549

Query: 543  FINAVADIKRELPHAMISGGVSNVSFSFRGNNYVREAIHAVFLYHCFKHGMDMGIVNAGQ 602
            FI A  +IKR LPHAMISGGVSNVSFSFRGNN VREAIHAVFLYH  + GMDMGIVNAGQ
Sbjct: 550  FIEATREIKRTLPHAMISGGVSNVSFSFRGNNPVREAIHAVFLYHAIQAGMDMGIVNAGQ 609

Query: 603  LEIYDNVPLKLREAVEDVILN-----RRSDGTERLLEIAEAYRENSV--GKEEDASALEW 655
            L IYD++   L+  VE V+ N     + S+ TE+LLEIAE YR +     K+ED   LEW
Sbjct: 610  LAIYDDIDPDLKARVEAVVQNLPCPVQGSNNTEQLLEIAEQYRGDGAAGAKKED---LEW 666

Query: 656  RAWPVAKRLEHALVKGITEFIVQDTEEARQQASKPLEVIEGPLMDGMNVVGDLFGEGKMF 715
            R+WPV KRLEHALVKGITEFI QDTEEARQ AS+PL+VIEGPLMDGMNVVGDLFG GKMF
Sbjct: 667  RSWPVNKRLEHALVKGITEFIDQDTEEARQLASRPLDVIEGPLMDGMNVVGDLFGSGKMF 726

Query: 716  LPQVVKSARVMKQAVAYLEPFINAQKSGSTSNGKILLATVKGDVHDIGKNIVGVVLQCNN 775
            LPQVVKSARVMK+AVAYL P+I A+K    SNGKIL+ TVKGDVHDIGKNIVGVVL CN 
Sbjct: 727  LPQVVKSARVMKKAVAYLNPYIEAEKVEGESNGKILMVTVKGDVHDIGKNIVGVVLACNG 786

Query: 776  FEIIDLGVMVPCEQILKVAREQNVDIIGLSGLITPSLDEMVHVAKEMERQGFELPLLIGG 835
            +E++DLGVMVP E+I++VA+ + VDIIG+SGLITPSLDEMVH  K   + G  +P +IGG
Sbjct: 787  YEVVDLGVMVPVEKIIEVAKAEKVDIIGMSGLITPSLDEMVHNVKAFHKAGLNIPSIIGG 846

Query: 836  ATTSKAHTAVKIEQNYHAPVVYVNNASRAVGVCTSLLSDEQRPGFIERLDLDYERTRDQH 895
            AT SK HTAVKI  +     +Y+ +ASRAV +   L++ E R   I+    +Y   RD+ 
Sbjct: 847  ATCSKIHTAVKIAPHAPEGAIYIADASRAVPMVAKLINKETRQATIDAAYEEYRVMRDKR 906

Query: 896  ARKTPKSRPVTLEQARANKAALDWANYTPPAPAKPGVHVFENIALATLRPYIDWTPFFMT 955
              +  + + V+LE AR N+   DW  +TP  P + G  VF++  L  L   IDWTPFF +
Sbjct: 907  NSQAKRKQIVSLEAARENRCQQDWNAHTPFVPNQLGRQVFDDYPLEDLVDRIDWTPFFRS 966

Query: 956  WSLMGKYPAILEHEEVGEEAKRLFHDANALLDKVEREGLLKASGMCALFPAASVG-DDIE 1014
            W L G +P IL+ E VGEEA++L+ DA A+L  +  E  L A  +  LFPA +V  DDIE
Sbjct: 967  WELHGHFPKILDDEVVGEEARKLYQDAKAMLKTIIDEKWLTAKAVIGLFPANTVNYDDIE 1026

Query: 1015 VYSDESRTQVAHVLYNLRQQTEKPKGANYCLSDYVAPKESGKRDWIGAFAVTGGIGERAL 1074
            +Y+DESR++V    ++LR Q E+    N+CL+D+VAPK+SG  D++G FAVT G G    
Sbjct: 1027 IYTDESRSKVEMTTHHLRMQIERVGNDNFCLADFVAPKDSGVADYMGGFAVTAGHGIDEH 1086

Query: 1075 ADAYKAQGDDYNAIMIQAVADRLAEAFAEYLHEKVRKEIWGYASDENLSNDDLIRERYQG 1134
               ++A  DDY+AIM++ +ADRL EAFAE +HE+VRKE WGYA+DENL N+ LIRE+Y+G
Sbjct: 1087 VARFEANHDDYSAIMLKCLADRLVEAFAERMHERVRKEFWGYAADENLDNEALIREKYKG 1146

Query: 1135 IRPAPGYPACPEHTEKATLWQMLNVEETIGMSLTTSYAMWPGASVSGWYFSHPDSRYFAV 1194
            IRPAPGYPACP+HTEK  LW++L  +ETI + +T SYAM+P A+VSGWYF+HP SRYF V
Sbjct: 1147 IRPAPGYPACPDHTEKGLLWELLKPDETIDLKITESYAMFPTAAVSGWYFAHPQSRYFGV 1206

Query: 1195 AQIQPDQLHSYAERKGWRLEEAEKWLAPNLD 1225
              I  DQ+  YA+RKG  +EE E+WLAP LD
Sbjct: 1207 TNIGRDQVEDYAKRKGMSVEETERWLAPVLD 1237