Pairwise Alignments

Query, 444 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 574 a.a., sodium/hydrogen exchanger family/TrkA domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 75.9 bits (185), Expect = 3e-18
 Identities = 88/356 (24%), Positives = 160/356 (44%), Gaps = 45/356 (12%)

Query: 77  LGFLLFAGGLGIKLPNLKDQKWEITVLALGATLFSTFFIGFTLYGFCQLIGIQFDLVYCL 136
           L  +L  GG+  ++ + +   W    LA      +T   G        L  +Q      L
Sbjct: 69  LAIILLDGGMRTRVASFRVALWPALSLATFGVAITTSITGVMAAWLFDLHWLQG-----L 123

Query: 137 LFGALISPTDPIAVLAIVKKLKAPKRISTQIEGESLFNDGFGLVIFVTIFTIAFGHETPT 196
           L GA++  TD  AV +++K     +R+   +E ES  ND   + + VT+  I        
Sbjct: 124 LVGAIVGSTDAAAVFSLLKGRSLNERVGATLEIESGSNDPMAVFLTVTLIAILANVGAEL 183

Query: 197 VGSVTLL-FIQEAIGGIVYGFLLGLLFHYLISATDDHSMELLLTIGIPTAG---YAFADV 252
             S  L+ FI++   G++ G   G L   L++ +     E L +I + + G   YA ++ 
Sbjct: 184 SASFMLISFIKQFGLGVLLGLGGGWLLWKLVNVSK--LAEGLYSILVLSGGLMIYATSNK 241

Query: 253 IHVSGPLAMVVSGIMIGNWTRFIGFSKESEEHLDHFWELVDEFLNGV-------LFLLIG 305
           +  SG L++ + G+ +GN        K +          +   L+G+       +FL++G
Sbjct: 242 LGGSGILSIYLVGLFLGN--------KPTRGR-----HAILNVLDGMTWVSQIGMFLVLG 288

Query: 306 MSMLLFEFHQEDWIL-MAFAVPLVLCGRYLSVFVSYIGFKRYRSYNPWSIRILTWGGLRG 364
           + +   +   + W+  +A A  ++L  R L+V++S + FK + S + W I   +W GLRG
Sbjct: 289 LLLTPSDL-LDIWLPGLALAFGMILFARPLAVWLSLLPFKSFGSRDRWFI---SWVGLRG 344

Query: 365 GLALAMALSIPSGIMVIPEKL-IDVKELILVMTYAVVVFSILVQGSTITPMIEKAK 419
            + + +A        V P    +   +L   + + VV+ S+LVQG+++T     AK
Sbjct: 345 AVPIILA--------VFPMMAGLPGAQLYFNLAFFVVIVSLLVQGASLTTAARLAK 392