Pairwise Alignments

Query, 444 a.a., sodium:proton antiporter from Vibrio cholerae E7946 ATCC 55056

Subject, 434 a.a., sodium/hydrogen exchanger family protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  401 bits (1031), Expect = e-116
 Identities = 207/418 (49%), Positives = 293/418 (70%)

Query: 1   MSVYYTLCFLSAAAMLIAFINSKISRMQTTIAITAGSMMLSLLILIAGQNDWFHLNQIAT 60
           M+ Y  LC LSA A++ +  +S++ ++Q T+AITA ++  SLL+L+ G+    ++     
Sbjct: 1   MTSYQILCILSALALVTSVASSRLHKLQETVAITALALGTSLLLLLGGKALGGNVYGYFV 60

Query: 61  ETVTSINFENFLLKGILGFLLFAGGLGIKLPNLKDQKWEITVLALGATLFSTFFIGFTLY 120
             +  ++F+  LL G+LGFLLFAG L I+L  L+ QKWEI +LA   TL STF +G  LY
Sbjct: 61  AGLEKLDFQALLLNGMLGFLLFAGALQIRLKILRHQKWEILILAFVGTLLSTFIVGGLLY 120

Query: 121 GFCQLIGIQFDLVYCLLFGALISPTDPIAVLAIVKKLKAPKRISTQIEGESLFNDGFGLV 180
               + G+   L +CLLFGALISPTDPIAVLAI+KK+ AP+ I+ Q+EGESLFNDG GLV
Sbjct: 121 YLAPMFGLPLALSHCLLFGALISPTDPIAVLAILKKMGAPEDIAIQVEGESLFNDGIGLV 180

Query: 181 IFVTIFTIAFGHETPTVGSVTLLFIQEAIGGIVYGFLLGLLFHYLISATDDHSMELLLTI 240
           IFV I  +AF  E  T   ++LLF+QEA+GG++YG +LGLL H+     ++ +  +L+T+
Sbjct: 181 IFVAISHLAFSTEPLTFTQISLLFVQEALGGVLYGAVLGLLLHHFFRYCEEETQLMLVTL 240

Query: 241 GIPTAGYAFADVIHVSGPLAMVVSGIMIGNWTRFIGFSKESEEHLDHFWELVDEFLNGVL 300
            IPTAGY  A  + VSGPLAMV +GI+IGN++    F+++    L  FW L++ F N +L
Sbjct: 241 LIPTAGYVMAAELGVSGPLAMVSAGIIIGNYSVPKFFARQERVKLYTFWSLIESFFNALL 300

Query: 301 FLLIGMSMLLFEFHQEDWILMAFAVPLVLCGRYLSVFVSYIGFKRYRSYNPWSIRILTWG 360
           FLL+G+ +LL  F    W  M  A+PLVL  R +SVF+ Y+GF+  +SYNP++  IL WG
Sbjct: 301 FLLLGLLLLLVTFKAPLWWFMLLAIPLVLTARAVSVFLPYMGFRLVKSYNPYAESILIWG 360

Query: 361 GLRGGLALAMALSIPSGIMVIPEKLIDVKELILVMTYAVVVFSILVQGSTITPMIEKA 418
           GLRGGLALAMA+S+P GI++  +  +++ EL+LVMTYAVVVFSIL+QGS++T +I ++
Sbjct: 361 GLRGGLALAMAMSLPKGIIIDSQPGVELHELVLVMTYAVVVFSILIQGSSMTGLIRRS 418