Pairwise Alignments

Query, 327 a.a., tRNA dihydrouridine(20/20a) synthase DusA from Vibrio cholerae E7946 ATCC 55056

Subject, 334 a.a., Dihydrouridine synthase TIM-barrel protein nifR3 from Synechococcus elongatus PCC 7942

 Score =  107 bits (267), Expect = 4e-28
 Identities = 91/321 (28%), Positives = 149/321 (46%), Gaps = 23/321 (7%)

Query: 6   RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFG 65
           R+  +P+   +DR  R   R  + Q+L++ EM   G  + GR D   +   E P+  Q  
Sbjct: 29  RVLQSPLAGVSDRSFRQLVRRSAPQSLIFAEMAHAGLQLAGR-DRWEFLPHEQPIGAQLF 87

Query: 66  GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVV 125
           G  P  LA  A+ A+  G   I+LN+GCP  +V   R G+ L+ EP+L    V A+ A V
Sbjct: 88  GDQPATLAAAAQQAEAAGAVCIDLNMGCPVSKVTRKRGGSALLREPELAIAIVQAVAAAV 147

Query: 126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
            IPVTVKTR+G +     +F  Q      E  G +  T+H R     G S +        
Sbjct: 148 SIPVTVKTRLGWEQVTILDFAQQL-----EAAGAQLLTLHGRSR-SQGYSGQ-------A 194

Query: 186 DYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH--LDGVMIGREAYQNPYLLAEVDQQ 243
           D+    ++K     + +  NG + S  +A   LQ    DGVM GR +  NP L+  +D+ 
Sbjct: 195 DWNWITRVKSRL-SIPVIANGDINSPADAIACLQQTGADGVMCGRGSLGNPGLVGAIDRS 253

Query: 244 I-FGLETP---VKKRSQVIHEMMPYIERELSQGTHLGHMTRHMLGLFQNMPGARQWRRHI 299
           +  G +TP   ++ R Q+  E +  +  +      L    +H+     + P  +  R+H+
Sbjct: 254 LKTGEQTPELELRDRLQLAREHLLLLWED-KGAAGLLQARKHLGWYLADQPDYQDLRQHL 312

Query: 300 SENAHKPGAGLEVVEQALAKI 320
              +      L++++ A+A +
Sbjct: 313 L-RSEDLSQSLDLLDAAIASV 332