Pairwise Alignments

Query, 327 a.a., tRNA dihydrouridine(20/20a) synthase DusA from Vibrio cholerae E7946 ATCC 55056

Subject, 335 a.a., TIM-barrel protein, yjbN family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  482 bits (1241), Expect = e-141
 Identities = 230/313 (73%), Positives = 261/313 (83%), Gaps = 1/313 (0%)

Query: 8   SVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFLAYNQEEHPVALQFGGS 67
           S+APMLDWTDRH RYF RL+SA  LLYTEMVTTGAI+HGRGD+L YNQEEHP+ALQ GGS
Sbjct: 17  SIAPMLDWTDRHYRYFARLMSANALLYTEMVTTGAILHGRGDYLTYNQEEHPLALQLGGS 76

Query: 68  NPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVVDI 127
           NP +LA CAKLA ERGYDE+NLNVGCPSDRVQNGRFGACLM EP+LVAECV AM+ VVDI
Sbjct: 77  NPVELARCAKLAAERGYDEVNLNVGCPSDRVQNGRFGACLMAEPELVAECVDAMKQVVDI 136

Query: 128 PVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPLDY 187
           PVTVKTRIGID+QDSYEFLT FI TV  K GC +F IHARKAWL GLSPKENREIPPLDY
Sbjct: 137 PVTVKTRIGIDEQDSYEFLTHFIDTVMAK-GCGEFIIHARKAWLQGLSPKENREIPPLDY 195

Query: 188 PRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQHLDGVMIGREAYQNPYLLAEVDQQIFGL 247
            R YQ+KRD+P L I++NGG+ SLE+A+ HLQHLDGVM+GREAYQNPY+LA+VDQ + G 
Sbjct: 196 DRVYQLKRDYPALNISINGGITSLEQAQTHLQHLDGVMVGREAYQNPYMLAQVDQVLCGS 255

Query: 248 ETPVKKRSQVIHEMMPYIERELSQGTHLGHMTRHMLGLFQNMPGARQWRRHISENAHKPG 307
              V  R  VI  M+PYIE  L  G  L H+TRHM+GLFQ +PGAR WRR++SENAHK G
Sbjct: 256 TKAVMSREAVIEAMLPYIEAHLQVGGRLNHITRHMIGLFQGLPGARAWRRYLSENAHKNG 315

Query: 308 AGLEVVEQALAKI 320
           AG+EVV+ A   +
Sbjct: 316 AGIEVVKLAYQSV 328