Pairwise Alignments

Query, 327 a.a., tRNA dihydrouridine(20/20a) synthase DusA from Vibrio cholerae E7946 ATCC 55056

Subject, 338 a.a., TIM-barrel protein, yjbN family (RefSeq) from Dinoroseobacter shibae DFL-12

 Score =  338 bits (866), Expect = 1e-97
 Identities = 178/321 (55%), Positives = 221/321 (68%), Gaps = 6/321 (1%)

Query: 4   SCRLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHG-RGDFLAYNQEEHPVAL 62
           S RLSVAPM+DWTDRHCR FHR  +   LLYTEMVT  A++ G  G  L + + EHP+AL
Sbjct: 12  SSRLSVAPMMDWTDRHCRMFHRQFTQHALLYTEMVTAPAVVRGDAGRLLEHAEAEHPLAL 71

Query: 63  QFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMR 122
           Q GGS+P +LA   ++A   G+DEINLNVGCPSDRVQ+G FGA LM +P LVA CVAAM 
Sbjct: 72  QLGGSDPVELAEAVRIACGHGFDEINLNVGCPSDRVQSGCFGAVLMEQPALVARCVAAMI 131

Query: 123 AVVDIP-VTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENRE 181
           A  D P +TVK RIG+DDQ   E L  F+ TV+E  G  +FTIHARKAWL GLSPKENR+
Sbjct: 132 AASDGPEITVKCRIGVDDQQPEEMLPGFLRTVSE-AGVRRFTIHARKAWLQGLSPKENRD 190

Query: 182 IPPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHL-QHLDGVMIGREAYQNP-YLLAE 239
           IPPLDYP   ++K+ FP L +++NGG+  L++A  HL   LDGVMIGR AY  P  +L +
Sbjct: 191 IPPLDYPLVVRMKQAFPGLHLSINGGITDLDQAAAHLASGLDGVMIGRAAYHEPARVLGD 250

Query: 240 VDQQIFGLETPVKKRSQVIHEMMPYIERELSQGTHLGHMTRHMLGLFQNMPGARQWRRHI 299
            D++ FG    V   +  +  M PYI   L++G  L  +TRHMLG F   PGAR WRR +
Sbjct: 251 ADRRFFGGAETVSAET-AVEAMRPYIADHLARGGKLAQITRHMLGAFAGRPGARGWRRVL 309

Query: 300 SENAHKPGAGLEVVEQALAKI 320
           SE  H+P AGL  +++ALA I
Sbjct: 310 SEEGHRPEAGLGTLDRALAHI 330