Pairwise Alignments

Query, 327 a.a., tRNA dihydrouridine(20/20a) synthase DusA from Vibrio cholerae E7946 ATCC 55056

Subject, 330 a.a., putative TIM-barrel enzyme, possible dehydrogenase, contains a highly conserved dihydrouridine synthase domain (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 88.6 bits (218), Expect = 2e-22
 Identities = 82/303 (27%), Positives = 134/303 (44%), Gaps = 30/303 (9%)

Query: 9   VAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHG---RGDFLAYNQEEHPVALQFG 65
           +APM D TD   R   +   A  ++YTE V++ A+I         L+ + EE PVA+Q  
Sbjct: 15  LAPMEDVTDPAFRLMCKKFGAD-MVYTEFVSSDALIRAVSKTAQKLSISDEERPVAIQIY 73

Query: 66  GSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMRAVV 125
           G + + +   AK+ ++   D +++N GCP  RV     GA ++     + E   A+   V
Sbjct: 74  GKDTETMVEAAKIVEQAQPDILDINFGCPVKRVAGKGAGAGMLQNIPKMLEITRAVVDAV 133

Query: 126 DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREIPPL 185
            IPVTVKTR+G D  +    +   +A   +  G    TIH R         +        
Sbjct: 134 KIPVTVKTRLGWDANNK---IIVDLAEQLQDCGIAALTIHGR--------TRAQMYTGEA 182

Query: 186 DYPRAYQIKRD-FPHLTIAVNGGVKSLEEAK--LHLQHLDGVMIGREAYQNPYLLAEVDQ 242
           D+    ++K +   H+ I  NG V + +  K       +D VMIGR ++  P++  EV  
Sbjct: 183 DWTLIGEVKNNQRMHIPIIGNGDVTTPQRCKECFDRYGVDAVMIGRASFGRPWIFKEVKH 242

Query: 243 QIFGLETPVKKRSQVIHEMMPYIERELSQGTHL-------GHMTRHMLG--LFQNMPGAR 293
               LET  +         M  + +E+    +L        H+ RH+    LF+ +P  +
Sbjct: 243 Y---LETGEELPPLSFEWCMEVLRQEVIDSVNLLDERRGILHVRRHLAASPLFKGIPNFK 299

Query: 294 QWR 296
           + R
Sbjct: 300 ETR 302