Pairwise Alignments

Query, 327 a.a., tRNA dihydrouridine(20/20a) synthase DusA from Vibrio cholerae E7946 ATCC 55056

Subject, 315 a.a., dihydrouridine synthase, DuS (RefSeq) from Shewanella sp. ANA-3

 Score = 71.6 bits (174), Expect = 2e-17
 Identities = 74/278 (26%), Positives = 113/278 (40%), Gaps = 31/278 (11%)

Query: 6   RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDFL---------AYNQE 56
           R+ +APM    D   R     ++   LL TE V     +     FL          +   
Sbjct: 2   RVILAPMEGVVDDLMRDILSSINPYDLLVTEFVRVVDQLLPEKVFLKLCPELLNGGFTPS 61

Query: 57  EHPVALQFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAE 116
             PV +Q  G  P  +A  A  A E G   ++ N GCP+  V     GA L+  P+ + +
Sbjct: 62  GTPVRVQLLGQEPNCMAENAMRAIELGSHGVDANFGCPAKMVNRSNGGAVLLQYPNTIHD 121

Query: 117 CVAAMRAVV--DIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGL 174
            V AMR  V  + PVT K R+G +D+     L    A    + G  +  IHAR       
Sbjct: 122 IVRAMRQAVPAEHPVTAKIRLGYEDKS----LFMENALAVYEAGATELAIHARS------ 171

Query: 175 SPKENREIPPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAK--LHLQHLDGVMIGREAYQ 232
             K +   PP  +    +++   P + +  NG + + E+AK  + +   D +MIGR A  
Sbjct: 172 --KVDGYKPPAYWEYITEVRERLP-IPVIANGEIWNREDAKRCMAVTGCDSIMIGRGAIS 228

Query: 233 NPYLLAEVDQQIFGLETPVKKRSQVIHEMMPYIERELS 270
            P L   +              +  +  M+ Y +RELS
Sbjct: 229 LPNLADTIK-----TGAAPYSWADTLGLMLSYTQRELS 261