Pairwise Alignments

Query, 327 a.a., tRNA dihydrouridine(20/20a) synthase DusA from Vibrio cholerae E7946 ATCC 55056

Subject, 322 a.a., nifR3 family TIM-barrel protein (RefSeq) from Shewanella sp. ANA-3

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 81/299 (27%), Positives = 138/299 (46%), Gaps = 31/299 (10%)

Query: 6   RLSVAPMLDWTDRHCRYFHRLLSAQTLLYTEMVTTGAIIHGRGDF---LAYNQEEHPVAL 62
           +L VAPM   TD+  R       A  L  +EM+++   +         + ++ EE   ++
Sbjct: 11  QLIVAPMAGVTDQAFRNLCLRYGA-ALAVSEMLSSNPEVWDTDKSRQRMTHSGEEGIRSV 69

Query: 63  QFGGSNPKDLAHCAKLAQERGYDEINLNVGCPSDRVQNGRFGACLMGEPDLVAECVAAMR 122
           Q  G++P+ +A  A+   E+G   I++N+GCP+ +V     G+ LM  P LV E + A+ 
Sbjct: 70  QIAGADPELMAQAAQFNVEQGAHIIDINMGCPAKKVNKKLAGSALMQNPPLVKEILQAVV 129

Query: 123 AVVDIPVTVKTRIGIDDQDSYEFLTQFIATVAEKGGCEQFTIHARKAWLSGLSPKENREI 182
           A V++PVT+K R G + +         IA +AE  G     +H R         ++    
Sbjct: 130 AAVEVPVTLKIRTGWEPEHRNGVQ---IAQIAEDCGIASLAVHGR--------TRQCMYR 178

Query: 183 PPLDYPRAYQIKRDFPHLTIAVNGGVKSLEEAKLHLQH--LDGVMIGREAYQNPYLLAEV 240
              +Y     IK++   + +  NG + S E+A+  L +  +D +MIGR A   P++  E+
Sbjct: 179 GDAEYDTIKAIKQNV-SIPVVANGDIDSPEKARFVLDYTGVDALMIGRGAQGRPWIFREI 237

Query: 241 DQQIFGLETPVKKRSQVIHEMMPYIERELSQGTHLGHMTRHMLGLFQNMPGARQWRRHI 299
                 L+T  K         +  IE    +   L H+T+ +  L+    G R  R+HI
Sbjct: 238 QHY---LDTGNK---------LAPIEVAEQRQVMLEHLTK-LYDLYGEYKGIRFARKHI 283