Pairwise Alignments

Query, 468 a.a., replicative DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 507 a.a., DnaB helicase (NCBI) from Rhodospirillum rubrum S1H

 Score =  299 bits (765), Expect = 2e-85
 Identities = 187/485 (38%), Positives = 278/485 (57%), Gaps = 44/485 (9%)

Query: 19  DAIKVPPHSLEAEQSVIGGLLLDNERWDTVSEHVMTQDFYSRPHRLIFDGVKSILEAGKP 78
           +A ++PP ++EAEQ+++G +L +N   + V + +    F    H  I++   ++ E G  
Sbjct: 19  EATRLPPANIEAEQALLGAILTNNRVLEKVGDFLRPAHFSHPAHGAIYEACVTLTERGHL 78

Query: 79  LDLITLSEYLEQREQLEDVGGFAYLADLAKNTPSAANINAYAEIVAERALVRNLIGVANE 138
            + +TL+ YL+ R +LE+VGG  YLA L     +  N   Y  +V +  L R LI + ++
Sbjct: 79  ANPVTLAPYLDHRTELEEVGGARYLAQLVNAVVTIINAEDYGTLVHDLFLRRELIALGSD 138

Query: 139 IADAGYDPQ-GRNAEDLLDLAESKVFAIAEARTSENEGPKNVDSILERTLERIELLYKTP 197
           + +  ++     +A D ++ AE K+F +A    +E  G K+    L   ++  E  +K  
Sbjct: 139 LVNDAFEADLDSSAVDQIEGAERKLFDLATTGQTEG-GLKSFKDSLIGAIDMAEKAHKR- 196

Query: 198 QDGVTGVNTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFAMNLCENAAM---------E 248
           +  + GV +   DL+KK  GL  SDL+I+A RPSMGKT  A  +  NAA          E
Sbjct: 197 EGQLAGVPSLLVDLDKKLGGLHDSDLLILAGRPSMGKTALATTIAFNAATFFRQEAQAGE 256

Query: 249 QDKPVLIFSLEMPAEQIMMRMLASLSRVDQTKIRTGQLDDEDWARISSTMGILMEKKNMY 308
             K V  FSLEM AEQ+  R+L+  + V   ++RTG+L +ED+ R+   +   +    ++
Sbjct: 257 PSKAVAFFSLEMSAEQLATRILSERAEVSSHRLRTGELANEDFDRVLQ-VATQLHSIPLF 315

Query: 309 IDDSSGLTPTEVRSRARRIAREHGG----LSLIMVDYLQLMR--VPALTDNRTLEIAEIS 362
           IDD+  L+   +R+R RR+AR HGG    L LI+VDYLQL++      ++NR  E++ I+
Sbjct: 316 IDDTPALSVGAMRTRCRRLARSHGGGGNGLGLIVVDYLQLLQGGKGERSENRVQEVSAIT 375

Query: 363 RSLKALAKELNVPVVALSQLNRSLEQRADKRPVNSDLRESGSIEQDADLIMFIYRDEVY- 421
           R LKALAKELNVPV+ALSQL+R +E R DKRP  SDLRESGSIEQDAD++MF++R++ Y 
Sbjct: 376 RGLKALAKELNVPVMALSQLSRQVESRDDKRPQLSDLRESGSIEQDADVVMFVFREQYYL 435

Query: 422 HPDSPLK------------------------GTAEIIIGKQRNGPIGSVRLTFQGHYSRF 457
               PL+                          AE+II KQR+GPIGSV L F G+Y+RF
Sbjct: 436 ERAEPLRKPDETDDRYQERHLSWIKRCEDAYNKAEVIIAKQRHGPIGSVSLFFDGNYTRF 495

Query: 458 DNYAG 462
            N  G
Sbjct: 496 GNLQG 500