Pairwise Alignments

Query, 468 a.a., replicative DNA helicase from Vibrio cholerae E7946 ATCC 55056

Subject, 517 a.a., DNA helicase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  334 bits (857), Expect = 4e-96
 Identities = 183/470 (38%), Positives = 299/470 (63%), Gaps = 17/470 (3%)

Query: 1   MADPRTDNRNRKIPDAQV--DAIKVPPHSLEAEQSVIGGLLLDNERWDTVSEHVMTQDFY 58
           MA+ R ++RN K    Q   D  ++ P + E E++V+G L+++ + +  VSE +  + FY
Sbjct: 1   MAEQRRNSRNTKSTKVQPVNDYGRIQPQAPELEEAVLGALMIEKDAYSLVSEILRPESFY 60

Query: 59  SRPHRLIFDGVKSILEAGKPLDLITLSEYLEQREQLEDVGGFAYLADLAKNTPSAANINA 118
              H+LI+  +  +    KP+D++T+ E L +R +LE+VGG  Y+  L+    S+A+I  
Sbjct: 61  EHRHQLIYAAITDLAVNQKPVDILTVKEQLSKRGELEEVGGPFYITQLSSKVASSAHIEY 120

Query: 119 YAEIVAERALVRNLIGVANEIADAGYDPQGRNAEDLLDLAESKVFAIAEARTSENEGPKN 178
           +A I+A+++L R LI   + I    +D +  + +DL+  AE K+F I++    ++     
Sbjct: 121 HARIIAQKSLARELITFTSNIQSKAFD-ETLDVDDLMQEAEGKLFEISQQNMKKDY--TQ 177

Query: 179 VDSILERTLERIELLYKTPQDGVTGVNTGFTDLNKKTAGLQGSDLIIVAARPSMGKTTFA 238
           ++ +++   + I+       DG++G+ +GFT L+K T+G Q SDLII+AARP+MGKT F 
Sbjct: 178 INPVIDEAYKLIQKA-AARTDGLSGLESGFTKLDKMTSGWQNSDLIIIAARPAMGKTAFV 236

Query: 239 MNLCENAAMEQDKPVLIFSLEMPAEQIMMRMLASLSRVDQTKIRTGQLDDEDWARISSTM 298
           +++ +N A++   PV +FSLEM   Q++ R++ ++  +   KI++GQL   +W ++   +
Sbjct: 237 LSMAKNIAVDYRNPVALFSLEMSNVQLVNRLITNVCEIPSEKIKSGQLASYEWQQLDYKL 296

Query: 299 GILMEKKNMYIDDSSGLTPTEVRSRARRIAREHGGLSLIMVDYLQLMRVPALT-DNRTLE 357
             L++   +Y+DD+  L+  E+R++ARR+ REH G+ +I++DYLQLM    +   +R  E
Sbjct: 297 KDLLDAP-LYVDDTPSLSVFELRTKARRLVREH-GVRIIIIDYLQLMNASGMAFGSRQEE 354

Query: 358 IAEISRSLKALAKELNVPVVALSQLNRSLEQRA---DKRPVNSDLRESGSIEQDADLIMF 414
           ++ ISRSLK LAKELN+P++ALSQLNR +E R     KRP  SDLRESG+IEQDAD++ F
Sbjct: 355 VSTISRSLKGLAKELNIPIIALSQLNRGVESREGIDGKRPQLSDLRESGAIEQDADMVCF 414

Query: 415 IYRDE---VYHPD--SPLKGTAEIIIGKQRNGPIGSVRLTFQGHYSRFDN 459
           I+R E   +Y  D  + L+G AEI+I K RNG +G V L F+G ++RF N
Sbjct: 415 IHRPEYYKIYQDDRGNDLRGMAEIVIAKHRNGAVGEVLLRFKGEFTRFSN 464