Pairwise Alignments

Query, 240 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 208 a.a., YheO-like PAS domain from Pseudomonas fluorescens FW300-N2E2

 Score = 73.6 bits (179), Expect = 3e-18
 Identities = 55/206 (26%), Positives = 99/206 (48%), Gaps = 10/206 (4%)

Query: 31  LRSYEAVVDGIASLIGPFCEIVLHSLEDLNTSAIKIANGENTGRQVGSPITDMALKMLRD 90
           L ++  + D IA+L  P  E+VLH   DL T  +       + R++G    D +L+ +  
Sbjct: 10  LENFRTIADAIATLFYPHAEVVLH---DLRTQKVDYIANNLSKREIGD---DSSLEDMLS 63

Query: 91  IEGSERNFSRSYFTRAKGGVLMKSITVAIRNGENRVIGLLCINVNLDA--PFSQVLKSFM 148
            + SERN    Y      G  ++S++  +RN +   + +LCIN+N+         L  F+
Sbjct: 64  EDVSERNIG-PYEKLNWDGQKIRSLSSVLRNADGHPLAVLCINLNISLFENAKAALDLFL 122

Query: 149 PTQEAQEAASSVNFASDVEELVDQTVERTIEEINGDKSVSNNTKNRQIVMALFDKGIFDI 208
              +      S+ F  D +E ++  +   + E     ++      R++V+AL  +G F  
Sbjct: 123 SPSKLIPQPDSL-FRDDWQERINTFLHAWMRERQLSLNLLTRDHKRELVLALHAEGAFKG 181

Query: 209 KDAINRVADRLNISKHTVYLYIRQRK 234
           K A N VA+ LN+ + TVY ++++ K
Sbjct: 182 KSASNYVANVLNMGRATVYKHLKELK 207