Pairwise Alignments

Query, 327 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 1191 a.a., AAA-like domain-containing protein from Synechocystis sp000284455 PCC 6803

 Score = 56.2 bits (134), Expect = 4e-12
 Identities = 38/131 (29%), Positives = 62/131 (47%), Gaps = 5/131 (3%)

Query: 161 HREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFE-HEQRVNRVTLQREGKLAF 219
           HR+ V SVA+S++     +   D   +LW T  G+ +R+F  H   + RV     GK+  
Sbjct: 559 HRDGVTSVAISSHKNLIASASRDGTVHLW-TPQGEFLREFTGHTGSIYRVDFSPNGKIFA 617

Query: 220 TSDGGNQALIWDLTADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNTQDG 279
           T+       IWDL  D   +Q     +  ++S + FS DG+ L + +    V +W+ + G
Sbjct: 618 TAGQDQTVKIWDL--DGNLLQTLKGHQDSVYSVS-FSPDGEILASTSRDRTVRLWHWRSG 674

Query: 280 KKIASFESENK 290
           K +A      K
Sbjct: 675 KTLAVLGGHTK 685



 Score = 46.6 bits (109), Expect = 3e-09
 Identities = 30/129 (23%), Positives = 52/129 (40%), Gaps = 3/129 (2%)

Query: 157 EFLAHREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGK 216
           EF  H   +  V  S NG+   T G D    +WD     +     H+  V  V+   +G+
Sbjct: 596 EFTGHTGSIYRVDFSPNGKIFATAGQDQTVKIWDLDGNLLQTLKGHQDSVYSVSFSPDGE 655

Query: 217 LAFTSDGGNQALIWDLTADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNT 276
           +  ++       +W   +      L    + +    A+FS DG+ L++    G + +W+ 
Sbjct: 656 ILASTSRDRTVRLWHWRSGKTLAVLGGHTKSV--DDAQFSPDGQTLVSVCRDGQIRLWDL 713

Query: 277 QDGKKIASF 285
            DG  I  F
Sbjct: 714 -DGNLIRQF 721



 Score = 39.7 bits (91), Expect = 4e-07
 Identities = 53/235 (22%), Positives = 88/235 (37%), Gaps = 17/235 (7%)

Query: 94  FAVTASQNNFAVWDLAWTQGKGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYV-DLVS 152
           FA         +WDL     + L    D  +  V  S DGE +L   +  + + +    S
Sbjct: 616 FATAGQDQTVKIWDLDGNLLQTLKGHQDS-VYSVSFSPDGE-ILASTSRDRTVRLWHWRS 673

Query: 153 GRRMEFLA-HREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFE-HEQRVNRVT 210
           G+ +  L  H + V+    S +G+  ++   D    LWD   G ++RQF   E     V 
Sbjct: 674 GKTLAVLGGHTKSVDDAQFSPDGQTLVSVCRDGQIRLWDLD-GNLIRQFGLPEVAFFGVN 732

Query: 211 LQREGKLAFTSDGGNQALIWDLTADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGL 270
               G L   +       +W    +   I+          +   F+ DGK+L + + +G 
Sbjct: 733 WHPNGNLLAVAADDGTVRLWTPQGE---IKATLSGHDEFVTRVVFTPDGKQLFSSSSNGS 789

Query: 271 VEVWNTQDGKKIASFESENKKDHGPTQAVVYDAAFDAQQRAVAGSSAGIAQAWRM 325
           V  W+T  GK +       KK  G  +A+   A          G+   + + W M
Sbjct: 790 VIHWST-SGKML-------KKYQGYPEAIFGLALASNGALLAIGAENNLVKVWDM 836



 Score = 39.3 bits (90), Expect = 5e-07
 Identities = 38/159 (23%), Positives = 61/159 (38%), Gaps = 18/159 (11%)

Query: 34  APEGSTAFGLSRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQANPVSVIRIADSER 93
           +P+G T   + RDG          Q+ LWDL     +   G   P+     V    +   
Sbjct: 693 SPDGQTLVSVCRDG----------QIRLWDL-DGNLIRQFGL--PEVAFFGVNWHPNGNL 739

Query: 94  FAVTASQNNFAVWDLAWTQG--KGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDLV 151
            AV A      +W     QG  K   S  D  +  V  + DG+Q+    +NG  I+    
Sbjct: 740 LAVAADDGTVRLWT---PQGEIKATLSGHDEFVTRVVFTPDGKQLFSSSSNGSVIHWSTS 796

Query: 152 SGRRMEFLAHREKVNSVALSANGRYALTGGNDYHAYLWD 190
                ++  + E +  +AL++NG     G  +    +WD
Sbjct: 797 GKMLKKYQGYPEAIFGLALASNGALLAIGAENNLVKVWD 835



 Score = 37.7 bits (86), Expect = 1e-06
 Identities = 23/109 (21%), Positives = 48/109 (44%), Gaps = 2/109 (1%)

Query: 124  IRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLAHREKVNSVALSANGRYALTGGND 183
            IR V L     Q+  G   G     +         +AH +++N +  S NG+Y L+ G +
Sbjct: 1000 IRSVSLHPTLPQLAAGDEQGNLTLWNFDGTLIRSIVAHGDRLNQLQYSPNGKYLLSAGRE 1059

Query: 184  YHAYLWDTKTGQIVRQFEHEQ-RVNRVTLQREGKLAFTSDGGNQALIWD 231
              A +W  + GQ++   + +   ++++ +  + +   T+       +WD
Sbjct: 1060 GTAKIWSVE-GQLLHTLKSDPLPIDQIAISPDSQWIATAASDGMVRLWD 1107



 Score = 36.2 bits (82), Expect = 4e-06
 Identities = 51/242 (21%), Positives = 91/242 (37%), Gaps = 38/242 (15%)

Query: 44   SRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQANPVSVIRIADSE-RFAVTASQNN 102
            S DG++ L+  + +Q  LW L    +L      D       + R+ D + R   T+ Q  
Sbjct: 898  SADGQW-LLGQRGRQWQLWQLQTKSQLLKTWRTD-------ISRVYDVDLRTTPTSPQ-- 947

Query: 103  FAVWDLAWTQGKGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLAHR 162
               W +A   G G   +  G   +    +  + V + L +     + L  G  ++    +
Sbjct: 948  ---WAIAMATGSGEVQLWQGTKNNQTSGNQSQGVPIELNDP----IVLALGNSIQ---RK 997

Query: 163  EKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQF-EHEQRVNRVTLQREGKLAFTS 221
            E + SV+L         G    +  LW+   G ++R    H  R+N++     GK   ++
Sbjct: 998  EPIRSVSLHPTLPQLAAGDEQGNLTLWNF-DGTLIRSIVAHGDRLNQLQYSPNGKYLLSA 1056

Query: 222  DGGNQALIWDL------TADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWN 275
                 A IW +      T  S P+ +              S D + + T    G+V +W+
Sbjct: 1057 GREGTAKIWSVEGQLLHTLKSDPLPIDQI---------AISPDSQWIATAASDGMVRLWD 1107

Query: 276  TQ 277
             Q
Sbjct: 1108 QQ 1109



 Score = 32.7 bits (73), Expect = 5e-05
 Identities = 37/204 (18%), Positives = 75/204 (36%), Gaps = 15/204 (7%)

Query: 44  SRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQ-----DPQANPVSVIRIADSERFAVTA 98
           S DG      S+ + + LW     K LA LG       D Q +P       D +      
Sbjct: 651 SPDGEILASTSRDRTVRLWHWRSGKTLAVLGGHTKSVDDAQFSP-------DGQTLVSVC 703

Query: 99  SQNNFAVWDLAWTQGKGLWSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEF 158
                 +WDL     +  + + +     V+   +G  + +   +G           +   
Sbjct: 704 RDGQIRLWDLDGNLIRQ-FGLPEVAFFGVNWHPNGNLLAVAADDGTVRLWTPQGEIKATL 762

Query: 159 LAHREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFE-HEQRVNRVTLQREGKL 217
             H E V  V  + +G+   +  ++     W T +G+++++++ + + +  + L   G L
Sbjct: 763 SGHDEFVTRVVFTPDGKQLFSSSSNGSVIHWST-SGKMLKKYQGYPEAIFGLALASNGAL 821

Query: 218 AFTSDGGNQALIWDLTADSKPIQL 241
                  N   +WD++  S  + L
Sbjct: 822 LAIGAENNLVKVWDMSPKSDLVNL 845