Pairwise Alignments
Query, 327 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056
Subject, 1491 a.a., WD-40 repeat (NCBI) from Rhodospirillum rubrum S1H
Score = 73.9 bits (180), Expect = 2e-17
Identities = 79/293 (26%), Positives = 133/293 (45%), Gaps = 24/293 (8%)
Query: 43 LSRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQA---NPVSVIRIADSERFAVTAS 99
LS DG+ A+ S +++WDL K A A + SV D +R T+
Sbjct: 855 LSPDGQRAVTASYDGIVLVWDLSAPKFPAITLAGSSGSVLSGRESVSFSPDGQRVLKTSE 914
Query: 100 QNNFAVWDLAWTQGKGLWSITDG----LIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRR 155
VWDL+ ++ + +IT G ++ S DG +V+ ++G A DL + +
Sbjct: 915 DGTAQVWDLSSSK---IQAITLGERGHYVQSASFSPDGRRVVTASSDGAAQVWDLSAPKT 971
Query: 156 MEFL--AHREKVNSVALSANGRYALTGGNDYHAYLWDTKTG--QIVRQFEHEQRVNRVTL 211
L H + V S + S +G+ +T +D A +W+ Q + H+ V +
Sbjct: 972 QAILLEGHEQPVQSASFSPDGQKVVTVSSDGTARVWNLSEPKPQALLLDGHKGLVQLASF 1031
Query: 212 QREGKLAFTSDGGNQALIWDLTADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLV 271
+G+ T+ G + A +WDL+A L I S A FS DG++++TG+ G V
Sbjct: 1032 SPDGQHVVTASG-DTARVWDLSAPKSQAFLLEGHEGSIQS-ASFSPDGRRVVTGSGEGTV 1089
Query: 272 EVWNTQDGKKIASFESENKKDHGPTQAVVYDAAFDAQQRAVAGSS-AGIAQAW 323
VW+ +++ +S+ G +A + A F A R+V +S G A+ W
Sbjct: 1090 RVWD------LSAPKSQPILLRGHLRATFF-ARFSADGRSVVTASYDGTARVW 1135
Score = 73.2 bits (178), Expect = 4e-17
Identities = 65/255 (25%), Positives = 108/255 (42%), Gaps = 24/255 (9%)
Query: 82 PVSVIRIA-DSERFAVTASQNNFAVWDLAWTQGKGL-WSITDGLIRDVDLSSDGEQVLLG 139
PV V ++ D +R V + VWDL+ + G+ G + +LS DG++ +
Sbjct: 806 PVRVASLSSDGQRVVVASDDEIVRVWDLSAPKSPGINLGEHQGSVFSANLSPDGQRAVTA 865
Query: 140 LTNGKAIYVDL---------VSGRRMEFLAHREKVNSVALSANGRYALTGGNDYHAYLWD 190
+G + DL ++G L+ RE SV+ S +G+ L D A +WD
Sbjct: 866 SYDGIVLVWDLSAPKFPAITLAGSSGSVLSGRE---SVSFSPDGQRVLKTSEDGTAQVWD 922
Query: 191 TKTGQI--VRQFEHEQRVNRVTLQREGKLAFTSDGGNQALIWDLTADSKPIQLQSFRRQL 248
+ +I + E V + +G+ T+ A +WDL+A L Q
Sbjct: 923 LSSSKIQAITLGERGHYVQSASFSPDGRRVVTASSDGAAQVWDLSAPKTQAILLEGHEQP 982
Query: 249 IFSTARFSDDGKKLITGTPSGLVEVWNTQDGKKIASFESENKKDHGPTQAVVYDAAFDAQ 308
+ +A FS DG+K++T + G VWN + K A +K +V A+F
Sbjct: 983 V-QSASFSPDGQKVVTVSSDGTARVWNLSEPKPQALLLDGHK-------GLVQLASFSPD 1034
Query: 309 QRAVAGSSAGIAQAW 323
+ V +S A+ W
Sbjct: 1035 GQHVVTASGDTARVW 1049
Score = 57.8 bits (138), Expect = 2e-12
Identities = 56/233 (24%), Positives = 101/233 (43%), Gaps = 30/233 (12%)
Query: 109 AWTQGKGLWSIT-DGLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRR--MEFLAHREKV 165
AW + + + ++ DG +R LSSDG++V++ + DL + + + H+ V
Sbjct: 791 AWLRNREVTTVGYDGPVRVASLSSDGQRVVVASDDEIVRVWDLSAPKSPGINLGEHQGSV 850
Query: 166 NSVALSANGRYALTGGNDYHAYLWDT------------KTGQIVRQFEHEQRVNRVTLQR 213
S LS +G+ A+T D +WD +G ++ E V+
Sbjct: 851 FSANLSPDGQRAVTASYDGIVLVWDLSAPKFPAITLAGSSGSVLSGRE------SVSFSP 904
Query: 214 EGKLAFTSDGGNQALIWDLTADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLVEV 273
+G+ + A +WDL++ SK + R +A FS DG++++T + G +V
Sbjct: 905 DGQRVLKTSEDGTAQVWDLSS-SKIQAITLGERGHYVQSASFSPDGRRVVTASSDGAAQV 963
Query: 274 WNTQDGKKIASFESENKKDHGPTQAVVYDAAFDAQ-QRAVAGSSAGIAQAWRM 325
W+ K A +++ V A+F Q+ V SS G A+ W +
Sbjct: 964 WDLSAPKTQAILLEGHEQP-------VQSASFSPDGQKVVTVSSDGTARVWNL 1009
Score = 57.0 bits (136), Expect = 3e-12
Identities = 66/267 (24%), Positives = 107/267 (40%), Gaps = 26/267 (9%)
Query: 29 QQWDLAPEGSTAFGL------------SRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQ 76
Q WDL+ A L S DGR + S +WDL K A L
Sbjct: 919 QVWDLSSSKIQAITLGERGHYVQSASFSPDGRRVVTASSDGAAQVWDLSAPKTQAIL--L 976
Query: 77 DPQANPVSVIRIADSERFAVTASQNNFA-VWDLAWTQGKGLWSITDG---LIRDVDLSSD 132
+ PV + + VT S + A VW+L+ + + L + DG L++ S D
Sbjct: 977 EGHEQPVQSASFSPDGQKVVTVSSDGTARVWNLSEPKPQAL--LLDGHKGLVQLASFSPD 1034
Query: 133 GEQVLLGLTNGKAIYVDLVSGRRMEFL--AHREKVNSVALSANGRYALTGGNDYHAYLWD 190
G+ V+ + ++ DL + + FL H + S + S +GR +TG + +WD
Sbjct: 1035 GQHVVTASGDTARVW-DLSAPKSQAFLLEGHEGSIQSASFSPDGRRVVTGSGEGTVRVWD 1093
Query: 191 TKT--GQIVRQFEHEQRVNRVTLQREGKLAFTSDGGNQALIWDLTADSKPIQLQSFRRQL 248
Q + H + +G+ T+ A +W + A +P +L
Sbjct: 1094 LSAPKSQPILLRGHLRATFFARFSADGRSVVTASYDGTARVWAVPA-VEPGELFLEGSDD 1152
Query: 249 IFSTARFSDDGKKLITGTPSGLVEVWN 275
+A FS DG+ L+T + V VW+
Sbjct: 1153 SVRSASFSPDGEHLVTISDDKTVRVWD 1179
Score = 53.9 bits (128), Expect = 2e-11
Identities = 67/280 (23%), Positives = 112/280 (40%), Gaps = 39/280 (13%)
Query: 44 SRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQANPVSVIRIADSERFAVTASQNNF 103
S DG + S + + +WDL K + L + + + S D +R +
Sbjct: 1160 SPDGEHLVTISDDKTVRVWDLSVPKPRSLL-LEGYEGSVQSASFSPDGQRLVTVSDDKTA 1218
Query: 104 AVWDLAWTQGKGL-WSITDGLIRDVDLSSDGEQVLLGLTNGKAIYVDL--VSGRRMEFLA 160
VWDLA + K L D + S DG +V+ + A DL + R + +
Sbjct: 1219 RVWDLAEPKAKALILEGDDASVGSASFSPDGRRVVTASYDKTARVWDLSALKPRAITLES 1278
Query: 161 HREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQRE------ 214
V S S +G+ + G + A +WD + + +++N LQ
Sbjct: 1279 SLGWVGSANFSPDGQ-RVVGASYGGAQIWDLSVPERPKLCMRLKQLNAGLLQSASFSPDG 1337
Query: 215 GKLAFTSDGGNQALIWDL-TADSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLVEV 273
G++ SDGG + + DL T S PI L R +A FS DG++++T + G V
Sbjct: 1338 GRVVTVSDGGTRVV--DLSTPKSPPITLGG--RLDRARSASFSPDGQRVLTASYDGTARV 1393
Query: 274 WN-----------------------TQDGKKIASFESENK 290
W+ ++DG+++ +F S NK
Sbjct: 1394 WDLAGSQASALVLGEYSSSMLYANFSRDGRRVLTFSSPNK 1433
Score = 48.9 bits (115), Expect = 8e-10
Identities = 56/250 (22%), Positives = 103/250 (41%), Gaps = 15/250 (6%)
Query: 36 EGST-AFGLSRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQANPVSVIRIADSERF 94
EGS + S DG+ + S + +WDL + K A + D + V + R
Sbjct: 1194 EGSVQSASFSPDGQRLVTVSDDKTARVWDLAEPKAKALILEGDDAS--VGSASFSPDGRR 1251
Query: 95 AVTASQNNFA-VWDLAWTQGKGLWSITD-GLIRDVDLSSDGEQVLLGLTNGKAIYVDLVS 152
VTAS + A VWDL+ + + + + G + + S DG++V+ G + G A DL
Sbjct: 1252 VVTASYDKTARVWDLSALKPRAITLESSLGWVGSANFSPDGQRVV-GASYGGAQIWDLSV 1310
Query: 153 GRRMEFLAHREKVNSVALSA------NGRYALTGGNDYHAYLWDTKTGQIVRQFEHEQRV 206
R + +++N+ L + GR T + R
Sbjct: 1311 PERPKLCMRLKQLNAGLLQSASFSPDGGRVVTVSDGGTRVVDLSTPKSPPITLGGRLDRA 1370
Query: 207 NRVTLQREGKLAFTSDGGNQALIWDLT-ADSKPIQLQSFRRQLIFSTARFSDDGKKLITG 265
+ +G+ T+ A +WDL + + + L + +++ A FS DG++++T
Sbjct: 1371 RSASFSPDGQRVLTASYDGTARVWDLAGSQASALVLGEYSSSMLY--ANFSRDGRRVLTF 1428
Query: 266 TPSGLVEVWN 275
+ + VW+
Sbjct: 1429 SSPNKLRVWD 1438
Score = 48.9 bits (115), Expect = 8e-10
Identities = 57/240 (23%), Positives = 96/240 (40%), Gaps = 14/240 (5%)
Query: 32 DLAPEGSTAFGLSRDGRFALIYSKQQQLVLWDLLQDKKLADLGAQDPQANPVSVIRIADS 91
D A GS +F S DGR + S + +WDL K A + V +
Sbjct: 1236 DDASVGSASF--SPDGRRVVTASYDKTARVWDLSALKPRAI--TLESSLGWVGSANFSPD 1291
Query: 92 ERFAVTASQNNFAVWDLAWTQGKGLW----SITDGLIRDVDLSSDGEQVLLGLTNGKAIY 147
+ V AS +WDL+ + L + GL++ S DG +V+ +++G
Sbjct: 1292 GQRVVGASYGGAQIWDLSVPERPKLCMRLKQLNAGLLQSASFSPDGGRVVT-VSDGGTRV 1350
Query: 148 VDLVSGRRMEFL--AHREKVNSVALSANGRYALTGGNDYHAYLWDTKTGQIVRQF--EHE 203
VDL + + ++ S + S +G+ LT D A +WD Q E+
Sbjct: 1351 VDLSTPKSPPITLGGRLDRARSASFSPDGQRVLTASYDGTARVWDLAGSQASALVLGEYS 1410
Query: 204 QRVNRVTLQREGKLAFTSDGGNQALIWDLTADSKPI-QLQSFRRQLIFSTARFSDDGKKL 262
+ R+G+ T N+ +WD+ D + + L R STA+ + G ++
Sbjct: 1411 SSMLYANFSRDGRRVLTFSSPNKLRVWDVYPDIRELSSLVRKRLTRCLSTAQREEFGLRV 1470