Pairwise Alignments

Query, 327 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 332 a.a., WD-40 repeat-containing protein (RefSeq) from Shewanella loihica PV-4

 Score = 85.5 bits (210), Expect = 2e-21
 Identities = 65/292 (22%), Positives = 125/292 (42%), Gaps = 8/292 (2%)

Query: 2   MRRIYHSLCALLVILMLSGCFF--THQAEQQWDLAPEGSTAFGL-SRDGRFALIYSKQQQ 58
           ++R+ H L   L++++LSGC    T Q  Q      E +   GL + D   A+  S+ + 
Sbjct: 4   LKRLCHLLSLALLLVVLSGCSDKQTSQPPQSLKRLVEDNLVAGLLAEDASLAVTLSRSRD 63

Query: 59  LVLWDLLQDKKLADLGAQDPQANPVSVIRIADSERFAVTASQNNFAVWDLAWTQGKGLWS 118
           L +W+L + K+     A   + +P   + ++ ++R+     +    + D+     +  W 
Sbjct: 64  LSVWNLPEGKQRFHWPANAFE-HPGYQLALSGNKRYLAYGGKRQITLIDIQQGNIQLTWQ 122

Query: 119 ITD----GLIRDVDLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLAHREKVNSVALSANG 174
           +        I  + L+  G ++ +G+  G  I VD  + +   F  H  +V  +A  A+ 
Sbjct: 123 VNGFDDYASISTLALNQSGSRIAIGMNEGSVILVDFKAQQFSLFKQHDAEVAFLAFGASD 182

Query: 175 RYALTGGNDYHAYLWDTKTGQIVRQFEHEQRVNRVTLQREGKLAFTSDGGNQALIWDLTA 234
              L+ G+D     W + +G+I++Q    QR+  +      +  F +D  +   +     
Sbjct: 183 ERLLSAGHDGKVLWWVSGSGEIIKQLSLPQRITSLAFDEADRRLFFADNLDNHQLLAFDT 242

Query: 235 DSKPIQLQSFRRQLIFSTARFSDDGKKLITGTPSGLVEVWNTQDGKKIASFE 286
                +L  F R   F  ARF   G +LIT T    +  W    GK++  ++
Sbjct: 243 GEALSELSYFERYRYFRRARFIHRGDELITATSKQTIFRWQVATGKELERWQ 294