Pairwise Alignments

Query, 327 a.a., hypothetical protein from Vibrio cholerae E7946 ATCC 55056

Subject, 316 a.a., hypothetical WD domain protein (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  164 bits (415), Expect = 3e-45
 Identities = 100/317 (31%), Positives = 167/317 (52%), Gaps = 5/317 (1%)

Query: 8   SLCALLVILMLSGCFFTHQAEQQWDLAPEGSTAFGLSRDGRFALIYSKQQQLVLWDLLQD 67
           +L  ++  + L+ C    +A+   +L+ E S +  LS DG  A+I ++ Q +  WDL+  
Sbjct: 4   TLLLVICTMFLTACH--PRADDIRELSKEPSYSASLSSDGTLAIIATQSQGVQCWDLIHH 61

Query: 68  KKLADLGAQDPQANPVSVIRIADSERFAVTASQNNFAVWDLAWTQGKGLWSITDGLIRDV 127
                    D      S   I+ +  F  + S+++  +W +A  +  G WS+       V
Sbjct: 62  TLKYQWIHGDLNTGVTSTA-ISPNGEFVASLSRDSVVLWTIADGKSLGWWSLPSSG-ESV 119

Query: 128 DLSSDGEQVLLGLTNGKAIYVDLVSGRRMEFLAHREKVNSVALSANGRYALTGGNDYHAY 187
            ++++G  +L+GL +G  + ++      ++FL H+E+VN+VA+SA+GR ALTG ND  A 
Sbjct: 120 AVANNGA-LLIGLNDGSVMSLNAAKTALIKFLGHKERVNTVAISADGRIALTGSNDMQAI 178

Query: 188 LWDTKTGQIVRQFEHEQRVNRVTLQREGKLAFTSDGGNQALIWDLTADSKPIQLQSFRRQ 247
           LW  ++GQ +  ++   RV +V L   G L+FT+   N+A IWD  +     QL+  RRQ
Sbjct: 179 LWQAQSGQPIHTWDLGSRVTKVALNDSGSLSFTNGSTNEAKIWDNASGKLLNQLEINRRQ 238

Query: 248 LIFSTARFSDDGKKLITGTPSGLVEVWNTQDGKKIASFESENKKDHGPTQAVVYDAAFDA 307
           + FS  RF+    +L+TGTP+  V +W    GK IA ++    K+     AVVY  A   
Sbjct: 239 MTFSAVRFTQQDNQLLTGTPAREVTLWQRNTGKPIAQWQIALTKNSQNRGAVVYSVAIRD 298

Query: 308 QQRAVAGSSAGIAQAWR 324
             + V+ SS G+ + W+
Sbjct: 299 TNKIVSISSQGLVETWQ 315