Pairwise Alignments

Query, 87 a.a., RNA-binding protein Hfq from Vibrio cholerae E7946 ATCC 55056

Subject, 82 a.a., RNA chaperone Hfq from Rhodopseudomonas palustris CGA009

 Score = 74.7 bits (182), Expect = 2e-19
 Identities = 39/78 (50%), Positives = 57/78 (73%), Gaps = 3/78 (3%)

Query: 3  KGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILL-KNTVNQMVYKHAIST 61
          + Q+LQD FLN +R+ + P++I+LVNG+KLQG +  FD F +LL ++  +Q+VYKHAIST
Sbjct: 5  RAQNLQDTFLNHVRKTKTPLTIFLVNGVKLQGIVTWFDNFCLLLRRDGHSQLVYKHAIST 64

Query: 62 VVPARPVS-HHSG-DRPA 77
          ++P  P+    SG D PA
Sbjct: 65 IMPGAPIQLFESGEDSPA 82