Pairwise Alignments

Query, 87 a.a., RNA-binding protein Hfq from Vibrio cholerae E7946 ATCC 55056

Subject, 88 a.a., RNA chaperone Hfq from Dyella japonica UNC79MFTsu3.2

 Score =  120 bits (301), Expect = 3e-33
 Identities = 62/84 (73%), Positives = 71/84 (84%), Gaps = 3/84 (3%)

Query: 1  MAKGQSLQDPFLNALRRERIPVSIYLVNGIKLQGQIESFDQFVILLKNTVNQMVYKHAIS 60
          M+KGQSLQDPFLNALRRER+PV+IYLVNGIKLQG IESFDQFV+LL+N V+QMVYKHAIS
Sbjct: 1  MSKGQSLQDPFLNALRRERVPVAIYLVNGIKLQGTIESFDQFVVLLRNQVSQMVYKHAIS 60

Query: 61 TVVPARPV---SHHSGDRPASDRP 81
          TVVP+R V   + H G   A+  P
Sbjct: 61 TVVPSRNVRMGTGHEGHVEATAAP 84