Pairwise Alignments

Query, 653 a.a., DNA mismatch repair protein MutL from Vibrio cholerae E7946 ATCC 55056

Subject, 608 a.a., DNA mismatch repair endonuclease MutL from Rhodanobacter denitrificans MT42

 Score =  406 bits (1044), Expect = e-117
 Identities = 257/630 (40%), Positives = 354/630 (56%), Gaps = 64/630 (10%)

Query: 3   IRILPARLANQIAAGEVVERPASVVKELVENSLDAGATRIDIDLEKGGAKLIRIRDNGSG 62
           IR LP  L NQIAAGEV+ERP+SVVKELVENSLDAGATRI++++E GGA+LIR+RD+G G
Sbjct: 4   IRPLPPELINQIAAGEVIERPSSVVKELVENSLDAGATRIEVEIEAGGARLIRVRDDGDG 63

Query: 63  IDKDELGLALSRHATSKIHTLDDLEAIMSLGFRGEALASISSVSRLTLTSRTVAQEEAWS 122
           I  DEL LA++ HATSKI + DDLE + S+GFRGEALAS+SSV+R  LTSR   Q+ A+ 
Sbjct: 64  IHADELPLAVASHATSKIGSFDDLEHVASMGFRGEALASVSSVARFALTSRVRDQDAAFR 123

Query: 123 AYSEGRDMAVKLQPAAHPVGTTVEVLDLFFNTPARRKFLRTEKTEFTHIDELLKRIALSR 182
              +G  +    +PA HP GT+VEV DLF+N PAR+KF+R E+TEF HID+LLK +AL+R
Sbjct: 124 IEVDGGGLQAA-RPAQHPQGTSVEVRDLFYNVPARKKFMRAERTEFAHIDDLLKSLALAR 182

Query: 183 FDVSFTLRHNGKIVRQYRAATTLPQQEKRLAAVCGNPFVQHMLRIELEHQGLKLHGWITT 242
             V F L HNGK VR ++AA     Q  R+A V G  F    LRI+    GL L GW+  
Sbjct: 183 SSVEFRLSHNGKPVRIWKAACDEQAQLVRVAEVLGEEFPAQSLRIDHAAAGLHLSGWVGL 242

Query: 243 PEGARQQSDLQYCYVNGRMMRDKLINHAIRQSYETSLRVDQFATYVLFIELDPHQVDVNV 302
           P  +R Q+D QY YVNGR++RD+++ HA+RQ+Y   L   + A +VL++ELDP  VDVNV
Sbjct: 243 PTASRAQADAQYFYVNGRLVRDRIVAHAVRQAYADVLFHGRHAAFVLYLELDPAGVDVNV 302

Query: 303 HPAKHEVRFHQARLVHDFIYQALSSALVQ--GAQVMAPTINEGAFHLPHCAEEVNPPVVP 360
           HPAKHEVRF + RLVHDF+++ L  AL Q    QV +P   E   HL   +   +PP   
Sbjct: 303 HPAKHEVRFREQRLVHDFLFRTLHEALAQTRAGQVASPVQAEDG-HLRLASASASPP--- 358

Query: 361 MIDTTQQERVWQAVQNTPDYPRKAPRDNDRDESDNPQVRERAVSNPWVASPKTASTGKER 420
                                              P +   A ++ W+        G+ R
Sbjct: 359 -----------------------------------PGMPAVAAASAWL-----GRAGQSR 378

Query: 421 YGSASVSKKEAAVYQTLM-QTPDLSDEEPSTASTIVSSIEAVKANIAIEKLGKAIQVVAG 479
             +  V +   A Y  L+ ++P ++   P  A+    S            LG AI  +  
Sbjct: 379 L-ALGVREAPLADYAALLGESPRMAGTAPMPAADDAES----------PPLGYAIAQLKS 427

Query: 480 QYLLMSSPQGCVLISLYQAQQLKLRGLLNAQH--GALKAQPLLVPLALKLNESEWQVAQR 537
            Y+L  +  G VL+ ++ A +      L +      L++Q LLVPL++ ++  E   A+ 
Sbjct: 428 IYVLAENAHGLVLVDMHAAHERITYEKLKSGRVTSNLRSQVLLVPLSIAVSAKEVAAAEE 487

Query: 538 HSSALLQLGIELKSRTNHSIMVMAVPQPLRQQNLQQLLPDLLSYAASCSES---QALSHQ 594
           H+ AL + G+EL      +I+V  +P  L   ++ QL  D+LS  A    S   Q L ++
Sbjct: 488 HAEALAEWGLELSRSGPATIVVRRIPALLEGADVGQLSRDVLSELAQHGSSRRLQELENE 547

Query: 595 ALADWLTQRIVVEKRDYTLAEAIGLIAELE 624
            L+       V   R  T+ E   L+ E+E
Sbjct: 548 LLSTMACHGSVRAGRRLTIPEMNALLREME 577