Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 402 a.a., N-acetylmuramoyl-L-alanine amidase (EC 3.5.1.28) from Pseudomonas fluorescens FW300-N1B4

 Score =  216 bits (549), Expect = 2e-60
 Identities = 130/385 (33%), Positives = 203/385 (52%), Gaps = 10/385 (2%)

Query: 34  ANVLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLVVDLKQSTSRAKLPVNVTESG 93
           A  +   R+W S D+ R+V D+   V Y  F+LS+P+RL++DL  +            + 
Sbjct: 24  ATQIRNARLWRSDDKLRLVFDLSGPVQYKTFSLSAPQRLIIDLSGANLSGDFSQLALSNT 83

Query: 94  ILSKVRASSPPEKSTFRLVFELKQKTTPTLFKLAPTPGGQYGHRLVIDMPHGKVSESSSA 153
           ++  +R+       T R+V +L        F L P  G   GHRLV+D+     +    A
Sbjct: 84  VIRSIRSGHFGRGDT-RIVLDLSGPVQLNSFLLPPQDG--QGHRLVLDLK--TAAPLQIA 138

Query: 154 STPSS-PAQVSKDASQLLGNDDIVVAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLADQ 212
           + PS  P  V   A       DI+V +D GHGG+DPG++G   + EKD+ LS+++ LA +
Sbjct: 139 AVPSEKPEPVPAKAHP---KRDIIVVVDPGHGGKDPGAVGAKGEREKDVVLSIAQLLAKR 195

Query: 213 LNAVPGMKAVLTRRGDYFVNLNKRTEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTR 272
           L    G    L R  D+FV L KR EIAR+  A + +SVHADA       G SV+ L+  
Sbjct: 196 LKREKGFDVKLVRNDDFFVPLRKRVEIARKHNADMFISVHADAAPRLTASGASVYCLSEG 255

Query: 273 RANTEIARWVENHEQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNIL 332
            A +  AR++   E  ++LL GA  +L+  + D  ++  +LD+  + +     ++ + +L
Sbjct: 256 GATSATARFMAQRENGADLL-GATSLLNLKDKDPMLAGVILDMSMNATIAASLQLGSTVL 314

Query: 333 REMGKVAHLHKTEPVNASLAVLKSPDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALA 392
             +  +  LH+     A  AVLKSPD+PS+LVETGFISNP + + L+   HQ  +A  L 
Sbjct: 315 GSLAGITTLHQKRVEQAGFAVLKSPDVPSILVETGFISNPRDSQRLVTARHQQAVADGLF 374

Query: 393 TAIVQYFEDNPPEGTLFANRGKAQK 417
             + +YF+ NPP  +  A + + +K
Sbjct: 375 EGLQRYFQKNPPVNSYIAWQQEQKK 399