Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 478 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas stutzeri RCH2

 Score =  343 bits (879), Expect = 1e-98
 Identities = 200/478 (41%), Positives = 291/478 (60%), Gaps = 27/478 (5%)

Query: 6   SVGVMLNVSRFVFLLFGFVLLAIAPQTWA-NVLEGVRVWPSPDETRVVLDVKSEVDYSYF 64
           ++G+ + +  F+    G  LL +A    A + ++ VR+W +PD TR+V D+   V++  F
Sbjct: 3   NMGLGMRIRTFIG---GLALLLMATDLLAASDVQSVRLWRAPDNTRLVFDLSGPVEHKIF 59

Query: 65  TLSSPERLVVDLKQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTLF 124
           TL++P+RLV+D+  +T +A+L     ++  ++ +RA    + +T R+V +L    +P  F
Sbjct: 60  TLTAPDRLVIDVTGATLKAELDKLALQNTPVASLRAGQH-DANTLRVVVDLHAPVSPKSF 118

Query: 125 KLAPTPGGQYGHRLVIDMPHGKVSE--------SSSASTPSSPAQVSKDASQLLGND--- 173
            LAP    QYGHRLV+D+     +         +++ +TP++P   +  A +L       
Sbjct: 119 SLAPNQ--QYGHRLVVDLFDQATAARAATQPPVTATPATPAAPVSPTLPAVKLPATGGSK 176

Query: 174 -DIVVAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVN 232
            DIV+AIDAGHGGEDPG+IGP + YEK + L +SK+L  Q+NA  G +A L R GDYF+ 
Sbjct: 177 RDIVIAIDAGHGGEDPGAIGPGKVYEKHVVLQISKELQRQINADKGFRAELVRTGDYFIP 236

Query: 233 LNKRTEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELL 292
           L KRTEIAR+  A L VS+HADA       G SVF L+ R A +E ARW+ + E +S+L+
Sbjct: 237 LRKRTEIARKKGADLFVSIHADAAPRSAAYGASVFALSDRGATSETARWLADSENRSDLI 296

Query: 293 GGAGEVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLA 352
           GGAG V S  + D+ ++  LLDL  + S      V   +L  MG++  LHK     A   
Sbjct: 297 GGAGNV-SLGDKDQMLAGVLLDLSMTASLSSSLNVGQKVLSNMGRITPLHKRRVEQAGFM 355

Query: 353 VLKSPDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFEDNPPEGTLFA-- 410
           VLKSPDIPS+LVETGFISNPSE K L   SHQ  LAR++ + + Q+F +NPP GT  A  
Sbjct: 356 VLKSPDIPSILVETGFISNPSEAKKLQTASHQQSLARSIHSGVRQFFHENPPPGTYVAWL 415

Query: 411 -NRGK----AQKHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPASS 463
            + GK     ++H V+ GES+ L+A +Y VS+ AL+ AN+L +  I VGQ L IPA++
Sbjct: 416 RDSGKIAAGPREHIVRSGESLALLAQRYQVSLAALRSANSLSNDVIKVGQTLNIPATT 473



 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 21/45 (46%), Positives = 30/45 (66%)

Query: 535 RKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLIIP 579
           R+H V+ GE L+ +A +Y VS+ ++R AN L  D + VGQ L IP
Sbjct: 426 REHIVRSGESLALLAQRYQVSLAALRSANSLSNDVIKVGQTLNIP 470