Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 471 a.a., N-acetylmuramoyl-L-alanine amidase from Pseudomonas syringae pv. syringae B728a

 Score =  333 bits (855), Expect = 7e-96
 Identities = 195/468 (41%), Positives = 280/468 (59%), Gaps = 25/468 (5%)

Query: 15  RFVFLLFGFVLLAIAPQTWANV-LEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLV 73
           R +  + G +L+A+A +  A   +  VR+W +PD TR+V D+   V +S FTL+SP+RLV
Sbjct: 4   RALVTVVGLLLMAMAVEAVAATQVRSVRLWRAPDNTRLVFDLTGPVQHSLFTLTSPDRLV 63

Query: 74  VDLKQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTLFKLAPTPGGQ 133
           +D+  +T    L V    + I S   A   P  +  R+V +LK+  TP  F LAP    Q
Sbjct: 64  IDINGATLGGPLNVPTANTPISSMRSAQRTP--TDLRVVIDLKKGVTPKSFTLAPNQ--Q 119

Query: 134 YGHRLVIDM--------PHGKVSESSSASTPSSPAQVSKDASQLL----GNDDIVVAIDA 181
           YG+RLV+D+        P   + ++++ + P+ P   +K   +L     G  DIVV IDA
Sbjct: 120 YGNRLVVDLYDNAADANPTPVIPDTAANTAPAVPVSPAKPEIKLTPVPNGKRDIVVVIDA 179

Query: 182 GHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIAR 241
           GHGGEDPG+ G   + EK++ LS++++L  Q+NA  G +A LTR GDYF+ L KRTEIAR
Sbjct: 180 GHGGEDPGASGGAGQKEKNVVLSIARELQRQVNAEKGYRAELTRTGDYFIPLRKRTEIAR 239

Query: 242 RSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLSK 301
              A L VS+HADA  +    G SVF L+ R A +E ARW+ + E +S+L+GGAG V S 
Sbjct: 240 SKGADLFVSIHADAAPSSAAFGASVFALSDRGATSETARWLADSENRSDLIGGAGAV-SL 298

Query: 302 TNNDRNVSQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIPS 361
            + DR ++  LLDL  + S      V   +L  +G+V  LHK     A   VLKSPDIPS
Sbjct: 299 DDKDRMLAGVLLDLSMTASLSSSLNVGQKVLSNIGRVTSLHKARVEQAGFMVLKSPDIPS 358

Query: 362 VLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYFEDNPPEGTLFA---NRGK---- 414
           +LVETGFISN +E   L   SHQ  LAR++ + + Q+F+ NPP+GT  A   + GK    
Sbjct: 359 ILVETGFISNANEANKLGSASHQQALARSITSGVKQFFQQNPPQGTYIAWLRDNGKLAQG 418

Query: 415 AQKHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPAS 462
            + H V+ GE++ ++A +Y +++  L+ ANNLKS  + +GQ L IP+S
Sbjct: 419 PRTHVVRSGETLAMLAARYDMNIATLRSANNLKSDELKIGQDLRIPSS 466



 Score = 48.5 bits (114), Expect = 6e-10
 Identities = 22/46 (47%), Positives = 33/46 (71%)

Query: 483 THVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLVLGQKLKITVS 528
           THVV++G+ L  LA  Y +++A+++  NNLKSD L +GQ L+I  S
Sbjct: 421 THVVRSGETLAMLAARYDMNIATLRSANNLKSDELKIGQDLRIPSS 466



 Score = 45.1 bits (105), Expect = 7e-09
 Identities = 19/46 (41%), Positives = 34/46 (73%)

Query: 535 RKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLIIPN 580
           R H V+ GE L+ +A +Y++++ ++R AN L++D+L +GQ L IP+
Sbjct: 420 RTHVVRSGETLAMLAARYDMNIATLRSANNLKSDELKIGQDLRIPS 465