Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 495 a.a., Slt family transglycosylase (RefSeq) from Shewanella amazonensis SB2B

 Score = 83.2 bits (204), Expect = 2e-20
 Identities = 49/166 (29%), Positives = 94/166 (56%), Gaps = 8/166 (4%)

Query: 417 KHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPASSAPNPVPVPVMANP 476
           +++++RG+S+ +IA Q+G +   LK+ N +K++ +  G+ L +PA+   N       A P
Sbjct: 331 RYQIKRGDSLSVIARQFGTTPQVLKQVNQMKNNQLIAGKELVVPANGRTNASAQLASATP 390

Query: 477 VETETITHVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLV-LGQKLKI---TVSLKDK 532
            +    ++ VK+GD L K+A  + +SV  +KK N+L S  ++  GQ L +   + ++ + 
Sbjct: 391 KQ----SYKVKSGDSLWKIAQAHGISVNDLKKWNSLGSKAIIRQGQLLTVWPGSKAVANT 446

Query: 533 PLRKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLII 578
               ++V+RG+ LS IA ++ V +  +   N+L +  L  GQ L +
Sbjct: 447 RSTTYQVKRGDSLSLIAQKFKVKISELMSWNKLSSSALQPGQTLTV 492



 Score = 62.0 bits (149), Expect = 5e-14
 Identities = 44/112 (39%), Positives = 63/112 (56%), Gaps = 13/112 (11%)

Query: 416 QKHKVQRGESIGLIANQYGVSVDALKKANNLKS-STISVGQLLTI-PASSAPNPVPVPVM 473
           Q +KV+ G+S+  IA  +G+SV+ LKK N+L S + I  GQLLT+ P S A        +
Sbjct: 392 QSYKVKSGDSLWKIAQAHGISVNDLKKWNSLGSKAIIRQGQLLTVWPGSKA--------V 443

Query: 474 ANPVETETITHVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLVLGQKLKI 525
           AN   T + T+ VK GD L  +A  +KV ++ +   N L S  L  GQ L +
Sbjct: 444 AN---TRSTTYQVKRGDSLSLIAQKFKVKISELMSWNKLSSSALQPGQTLTV 492



 Score = 42.7 bits (99), Expect = 3e-08
 Identities = 15/44 (34%), Positives = 33/44 (75%)

Query: 536 KHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLIIP 579
           +++++RG+ LS IA Q+  +   ++Q NQ++ +QL+ G++L++P
Sbjct: 331 RYQIKRGDSLSVIARQFGTTPQVLKQVNQMKNNQLIAGKELVVP 374



 Score = 38.5 bits (88), Expect = 6e-07
 Identities = 17/46 (36%), Positives = 29/46 (63%)

Query: 414 KAQKHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTI 459
           ++  ++V+RG+S+ LIA ++ V +  L   N L SS +  GQ LT+
Sbjct: 447 RSTTYQVKRGDSLSLIAQKFKVKISELMSWNKLSSSALQPGQTLTV 492