Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 522 a.a., N-acetylmuramoyl-L-alanine amidase (NCBI) from Rhodospirillum rubrum S1H

 Score =  145 bits (365), Expect = 5e-39
 Identities = 87/225 (38%), Positives = 127/225 (56%), Gaps = 7/225 (3%)

Query: 176 VVAIDAGHGGEDPGSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNK 235
           V+ +D GHGG+DPG+IG +  YEK +TL ++++L   L A    K VLTR  D  V L +
Sbjct: 294 VIVLDPGHGGKDPGAIGASGTYEKIVTLEMARQLKRALEATGRYKVVLTRESDTSVRLRE 353

Query: 236 RTEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGA 295
           R    R + A L VS+HADA   PQ RG SV+ L+   ++ E A+  +   +   LLG  
Sbjct: 354 RIAFGRHAGADLFVSIHADAMANPQVRGLSVYTLSETASDDEAAQLADRENKVDILLG-- 411

Query: 296 GEVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREM-GKVAHLHKTEPVNASLAVL 354
              +  +    +V+  L+DL    ++ +    A  ++  + G V  L KT    A  AVL
Sbjct: 412 ---MDLSQESPDVATILIDLAQRETKNKSVHFANTLVSALPGDVLKLEKTRRY-AGFAVL 467

Query: 355 KSPDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALATAIVQYF 399
           K+PD+PSVLVE GF+SN S+EKLL    ++ KLA AL  ++  +F
Sbjct: 468 KAPDVPSVLVEMGFLSNVSDEKLLRTAPYRAKLAAALVRSVDDFF 512



 Score = 38.5 bits (88), Expect = 7e-07
 Identities = 47/178 (26%), Positives = 77/178 (43%), Gaps = 17/178 (9%)

Query: 25  LLAIAPQTWANVLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLVVDLKQSTSRAK 84
           LLA  P   A    G+R+      TR VL++   V +   +LS+P RL++D+ +      
Sbjct: 37  LLAPRPALAATRATGLRLGDHGGSTRFVLELSGPVTWQLVSLSAPYRLIIDMPE--VEFA 94

Query: 85  LPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTL----FKLAPTPGGQYGHRLVI 140
           L +   ++G+++  R          R+V +L   T P +    F L P  G  +G RLV+
Sbjct: 95  LGLVPRDTGLVAGAR-YGVVRPGFSRMVIDL---TGPAMVDKDFLLEPREG--FGWRLVM 148

Query: 141 DM----PHGKVSESSSASTPSSPAQVSKDAS-QLLGNDDIVVAIDAGHGGEDPGSIGP 193
           D+    P   ++     + P  PA V+ + S + +          A  G   P  IGP
Sbjct: 149 DLVPTTPEIFMAGVGQPAKPVVPATVTPEPSTRAVAFAAAAAPAAAASGTTAPTPIGP 206