Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 436 a.a., putative N-acetylmuramoyl-L-alanine amidase AmiC from Phaeobacter inhibens DSM 17395

 Score =  119 bits (299), Expect = 2e-31
 Identities = 98/364 (26%), Positives = 165/364 (45%), Gaps = 24/364 (6%)

Query: 49  TRVVLDVKSEVDYSYFTLSSPERLVVDLKQ-STSRAKLPVNVTESGILSKVRASSPPEKS 107
           T + L +   V Y  FTL++P R+V+D ++   S       VTE GI +    +  P  S
Sbjct: 70  TNITLGLSQGVPYRLFTLAAPPRVVLDFQEVDWSGLSAQALVTEDGITAAQFGTYVPGWS 129

Query: 108 TFRLVFELKQKTTPTLFKLAPTPGGQYGHRLVIDMPHGKVSESSSAS---------TPSS 158
              L      +       + P        RL + +      E ++ +          P+ 
Sbjct: 130 RLVLALAQPMQIETAAMDIDPVTAAA---RLSMALRETTAEEFAATTGAPRDARWDLPAP 186

Query: 159 PAQVSKDASQLLGNDDIVVAIDAGHGGEDPGS---IGPTRKYEKDITLSVSKKLADQLNA 215
              ++++A   L    +++ ID GHGG DPG+   +      EKD+ L  + +L + L  
Sbjct: 187 TPMIAREAKDSLA--PLLIVIDPGHGGIDPGAEAFLQGGLVQEKDLMLQFAIELGEMLVR 244

Query: 216 VPGMKAVLTRRGDYFVNLNKRTEIARRSKAHLLVSVHADAFHTPQPRGGSVFVLNTRRAN 275
                  LTR  DYFV+L +R  +A ++KA L +S+HAD+    +  G +V+ L+   ++
Sbjct: 245 SGQFNVQLTRDDDYFVSLERRIALAHQAKADLFLSLHADSLSEGRAHGTTVYTLSDDASD 304

Query: 276 TEIARWVENHEQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSHSQKEGYKVATNILREM 335
              A  VE  E+   L   AG  LS+   D  V+  LLDL    +      +A  +++ +
Sbjct: 305 AASATLVERQERGDLL---AGTDLSQA--DDRVTDVLLDLARVETHPRSQALARALVKGL 359

Query: 336 GKVAHLHKTEPV-NASLAVLKSPDIPSVLVETGFISNPSEEKLLIQRSHQDKLARALATA 394
                     P+  A  +VLKS DIPS LVE GF+S+P +   L+    +++ AR +   
Sbjct: 360 KSQGGAMNRRPLREAGFSVLKSADIPSALVEVGFLSSPRDLANLMDPEWRERTARGILNG 419

Query: 395 IVQY 398
           ++ +
Sbjct: 420 LLSW 423