Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 475 a.a., N-acetylmuramoyl-L-alanine amidase AmiB from Pseudomonas aeruginosa PA14

 Score =  319 bits (818), Expect = 1e-91
 Identities = 183/445 (41%), Positives = 273/445 (61%), Gaps = 22/445 (4%)

Query: 37  LEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLVVDLKQSTSRAKLPVNVTESGILS 96
           ++ VR+W +PD TR+V D+   V +S FTL++P R+V+D+  +    +L      +  ++
Sbjct: 31  IKSVRIWRAPDNTRLVFDLSGPVQHSLFTLAAPNRIVIDVSGAQLATQLNGLKLGNTPIT 90

Query: 97  KVRASSPPEKSTFRLVFELKQKTTPTLFKLAPTPGGQYGHRLVIDMPHG------KVSES 150
            VR S+    +  R+V +L  + TP  F L P    QYG+RLV+D+          V  +
Sbjct: 91  AVR-SAQRTPNDLRMVLDLSAQVTPKSFVLPPNQ--QYGNRLVVDLYDQGADLTPDVPAT 147

Query: 151 SSASTPSSPAQVSKDASQLL-----GNDDIVVAIDAGHGGEDPGSIGPTRKYEKDITLSV 205
            + S P +P   ++  ++L      G  DIV+AIDAGHGGEDPG++GP   +EK+ITLS+
Sbjct: 148 PTPSVPVTPVTPTQPVAKLPLPTKGGTRDIVIAIDAGHGGEDPGALGPGGLHEKNITLSI 207

Query: 206 SKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIARRSKAHLLVSVHADAFHTPQPRGGS 265
           +++L  Q+N V G +A LTR GDYF+ L KRTEIAR+  A L VS+HADA  +    G S
Sbjct: 208 ARELQRQINQVRGYRAELTRTGDYFIPLRKRTEIARKKGADLFVSIHADAAPSRSAFGAS 267

Query: 266 VFVLNTRRANTEIARWVENHEQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSHSQKEGY 325
           VF L+ R A +E ARW+ + E +S+L+GG G V S  + D+ ++  LLDL  + +     
Sbjct: 268 VFALSDRGATSETARWLADSENRSDLIGGDGSV-SLGDKDQMLAGVLLDLSMTATLSSSL 326

Query: 326 KVATNILREMGKVAHLHKTEPVNASLAVLKSPDIPSVLVETGFISNPSEEKLLIQRSHQD 385
            V   +L  +G++  LHK     A   VLKSPDIPS+LVETGFISN +E + L   SHQ 
Sbjct: 327 DVGHKVLTNVGRITSLHKRRVEQAGFMVLKSPDIPSILVETGFISNVNESRKLASASHQQ 386

Query: 386 KLARALATAIVQYFEDNPPEGTLFAN---RGK----AQKHKVQRGESIGLIANQYGVSVD 438
            LAR++ + I QYF+ +PP GT  A+   +GK     ++H V+ GE++ +IA +Y VS+ 
Sbjct: 387 ALARSITSGIRQYFQQSPPPGTYIASLRAQGKLSMGPREHVVRPGETLAMIAQRYEVSMA 446

Query: 439 ALKKANNLKSSTISVGQLLTIPASS 463
           AL+ +N+L S  + VGQ L+IP+++
Sbjct: 447 ALRSSNSLPSDNLKVGQALSIPSTA 471



 Score = 45.1 bits (105), Expect = 7e-09
 Identities = 22/46 (47%), Positives = 32/46 (69%)

Query: 535 RKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLIIPN 580
           R+H V+ GE L+ IA +Y VS+ ++R +N L +D L VGQ L IP+
Sbjct: 424 REHVVRPGETLAMIAQRYEVSMAALRSSNSLPSDNLKVGQALSIPS 469



 Score = 42.0 bits (97), Expect = 6e-08
 Identities = 19/42 (45%), Positives = 29/42 (69%)

Query: 484 HVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLVLGQKLKI 525
           HVV+ G+ L  +A  Y+VS+A+++  N+L SD L +GQ L I
Sbjct: 426 HVVRPGETLAMIAQRYEVSMAALRSSNSLPSDNLKVGQALSI 467