Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 439 a.a., N-acetylmuramoyl-L-alanine amidase (RefSeq) from Shewanella loihica PV-4

 Score =  437 bits (1123), Expect = e-127
 Identities = 231/452 (51%), Positives = 309/452 (68%), Gaps = 16/452 (3%)

Query: 10  MLNVSRFVFLLFGFVLLAIAPQTW-ANVLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSS 68
           M+     +  L   VLL I    + AN LEGVR+W +P+ TRVV D++    YS+FTL+S
Sbjct: 1   MIRTESLIKRLLLIVLLCIPSVAYSANKLEGVRIWAAPESTRVVFDLREPPKYSHFTLTS 60

Query: 69  PERLVVDLKQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTLFKLAP 128
           P RLVVDL  + +   L      S ++ +VR S PP+K T RLV +L +     LF L+P
Sbjct: 61  PYRLVVDLTTTATGLDLNKIENNSKLVKRVRISKPPKKGTLRLVIDLVKPAKANLFALSP 120

Query: 129 TPGGQYGHRLVIDMPHGKVSESSSASTPSSPAQVSKDASQLLGNDDIVVAIDAGHGGEDP 188
           T    YG+RLV+D+  G            SP  V  +  Q L   DI+VAIDAGHGG+DP
Sbjct: 121 T--APYGNRLVVDLEGGN----------QSPKTVKVEPEQKLR--DIIVAIDAGHGGDDP 166

Query: 189 GSIGPTRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIARRSKAHLL 248
           GSIGP+  YEK + L ++KK+  ++NA PGM+A++TR GDYFVNLNKR+EIAR SKA LL
Sbjct: 167 GSIGPSGIYEKKVALQIAKKVEAKINATPGMRAIMTRSGDYFVNLNKRSEIARNSKADLL 226

Query: 249 VSVHADAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLSKTNNDRNV 308
           VS+HADAF +PQP+G SV+VL+ RRAN+EI RW+E  E+ SELLGGAGE++   +N++ +
Sbjct: 227 VSIHADAFTSPQPQGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNADNEQYL 286

Query: 309 SQTLLDLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIPSVLVETGF 368
           + TLLD+    S    + +A ++L  +GKV  LHK +P  ASLAVLKSPDIPS+LVETGF
Sbjct: 287 AMTLLDMSMDRSMAISHNIAGDVLANLGKVTRLHKHKPEAASLAVLKSPDIPSILVETGF 346

Query: 369 ISNPSEEKLLIQRSHQDKLARALATAIVQYFEDNPPEGTLFANRGKAQKHKVQRGESIGL 428
           ISN  EE+LL QR HQ+ +A A+   +V+YFE+NPP  T+ A++    KHKV  GES+ +
Sbjct: 347 ISNHKEERLLTQRDHQNNIANAVHKGVVRYFENNPPANTMMASK-SGIKHKVTAGESLSV 405

Query: 429 IANQYGVSVDALKKANNLKSSTISVGQLLTIP 460
           IA++Y VSVD++KKAN LKS+T+ +GQ L IP
Sbjct: 406 IAHRYQVSVDSIKKANKLKSNTLYIGQKLIIP 437



 Score = 56.2 bits (134), Expect = 3e-12
 Identities = 27/44 (61%), Positives = 36/44 (81%)

Query: 536 KHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLIIP 579
           KHKV  GE LS IA +Y VSVDSI++AN+L+++ L +GQ+LIIP
Sbjct: 394 KHKVTAGESLSVIAHRYQVSVDSIKKANKLKSNTLYIGQKLIIP 437