Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 477 a.a., transglycosylase, Slt family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 67.8 bits (164), Expect = 1e-15
 Identities = 53/164 (32%), Positives = 85/164 (51%), Gaps = 29/164 (17%)

Query: 390 ALATAIVQYFEDNPPEGTLFAN-RGKAQKHKVQRGESIGLIANQYGVSVDALKKANNLKS 448
           AL    + ++++N  +  L+A  R  +Q + V+ G+S+G IA ++ +SV  LK+ANNL S
Sbjct: 315 ALPIENIGHYQEN--QHKLYAQKRYDSQTYIVKSGDSLGTIAAKFDLSVKELKQANNLTS 372

Query: 449 STISVGQLLTIPASSAPN---PVPVPVMANPVETETI----------------------T 483
             + +GQ LT+    A N   P PV   AN  ++ T                       T
Sbjct: 373 DRLKIGQELTLLTPMAANDNEPEPVKTKANTDKSSTKANASSTKATSSKSTDKPVAKAKT 432

Query: 484 HVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLVL-GQKLKIT 526
           + VK+GD L K+A   KV +A + K N L + +++  GQ+LKI+
Sbjct: 433 YKVKSGDSLDKIARKSKVKLADLMKWNQLNAKSIIKPGQELKIS 476



 Score = 52.4 bits (124), Expect = 4e-11
 Identities = 53/220 (24%), Positives = 89/220 (40%), Gaps = 59/220 (26%)

Query: 410 ANRGKAQKHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPASSAPNPVP 469
           ANR   ++     G  I  IAN  G++    K        T + G   ++  S     + 
Sbjct: 264 ANRPFLERLPAPNGVEISQIANAAGLTKAEFK--------TYNPGYRQSVIPSKGKYQIA 315

Query: 470 VPV------------MANPVETETITHVVKTGDFLGKLATTYKVSVASIKKENNLKSDTL 517
           +P+            +      ++ T++VK+GD LG +A  + +SV  +K+ NNL SD L
Sbjct: 316 LPIENIGHYQENQHKLYAQKRYDSQTYIVKSGDSLGTIAAKFDLSVKELKQANNLTSDRL 375

Query: 518 VLGQKLKITVSL-----------------------------------KDKPLRK---HKV 539
            +GQ+L +   +                                    DKP+ K   +KV
Sbjct: 376 KIGQELTLLTPMAANDNEPEPVKTKANTDKSSTKANASSTKATSSKSTDKPVAKAKTYKV 435

Query: 540 QRGEFLSKIADQYNVSVDSIRQANQLRTDQLL-VGQQLII 578
           + G+ L KIA +  V +  + + NQL    ++  GQ+L I
Sbjct: 436 KSGDSLDKIARKSKVKLADLMKWNQLNAKSIIKPGQELKI 475