Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 515 a.a., transglycosylase, Slt family (NCBI ptt file) from Shewanella oneidensis MR-1

 Score = 76.3 bits (186), Expect = 3e-18
 Identities = 54/176 (30%), Positives = 94/176 (53%), Gaps = 16/176 (9%)

Query: 417 KHKVQRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPAS---------SAPNP 467
           ++ ++ G+SIG IA ++  +V+A++ AN +KS+ I  G+ L IP S         S    
Sbjct: 330 RYTIKSGDSIGSIAQKHHTTVNAIRAANGMKSNNIVAGRHLIIPVSADDKQLYALSTSQK 389

Query: 468 VPVPVMANPVETETITHVVKTGDFLGKLATTYKVSVASIKKENNLKSDT-LVLGQKLKIT 526
           +P    A       +T+ VK+GD L ++A  + VSV  +   N+L  D+ L  GQKL I 
Sbjct: 390 LPKKA-AGATSGNKLTYQVKSGDSLWQIAQAHNVSVKQLTAWNHLSKDSKLQTGQKLTIV 448

Query: 527 V---SLKDKPLR--KHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLI 577
                L  + +R   +KV+ G+ L++IA ++ V+V  + + N L   Q ++  Q++
Sbjct: 449 APQEKLDSEHIRTVSYKVKSGDSLAQIASKFKVTVAELLEWNSLTPSQYILPGQVL 504



 Score = 59.7 bits (143), Expect = 3e-13
 Identities = 49/153 (32%), Positives = 76/153 (49%), Gaps = 16/153 (10%)

Query: 377 LLIQRSHQDKLARALATAIVQYFEDNPPEGTLFANRGKAQKHKVQRGESIGLIANQYGVS 436
           L+I  S  DK   AL+T+         P+    A  G    ++V+ G+S+  IA  + VS
Sbjct: 370 LIIPVSADDKQLYALSTS------QKLPKKAAGATSGNKLTYQVKSGDSLWQIAQAHNVS 423

Query: 437 VDALKKANNL-KSSTISVGQLLTIPASSAPNPVPVPVMANPVETETITHVVKTGDFLGKL 495
           V  L   N+L K S +  GQ LTI A             +     T+++ VK+GD L ++
Sbjct: 424 VKQLTAWNHLSKDSKLQTGQKLTIVAPQE--------KLDSEHIRTVSYKVKSGDSLAQI 475

Query: 496 ATTYKVSVASIKKENNLKSDTLVL-GQKLKITV 527
           A+ +KV+VA + + N+L     +L GQ LK+ V
Sbjct: 476 ASKFKVTVAELLEWNSLTPSQYILPGQVLKLVV 508



 Score = 52.0 bits (123), Expect = 6e-11
 Identities = 36/119 (30%), Positives = 59/119 (49%), Gaps = 22/119 (18%)

Query: 482 ITHVVKTGDFLGKLATTYKVSVASIKKENNLKSDTLVLGQKLKITVSLKDKPL------- 534
           + + +K+GD +G +A  +  +V +I+  N +KS+ +V G+ L I VS  DK L       
Sbjct: 329 LRYTIKSGDSIGSIAQKHHTTVNAIRAANGMKSNNIVAGRHLIIPVSADDKQLYALSTSQ 388

Query: 535 --------------RKHKVQRGEFLSKIADQYNVSVDSIRQANQLRTD-QLLVGQQLII 578
                           ++V+ G+ L +IA  +NVSV  +   N L  D +L  GQ+L I
Sbjct: 389 KLPKKAAGATSGNKLTYQVKSGDSLWQIAQAHNVSVKQLTAWNHLSKDSKLQTGQKLTI 447