Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., N-acetylmuramoyl-L-alanine amidase (NCBI ptt file) from Shewanella oneidensis MR-1

 Score =  412 bits (1058), Expect = e-119
 Identities = 220/462 (47%), Positives = 302/462 (65%), Gaps = 29/462 (6%)

Query: 22  GFVLL-----AIAPQTWANVLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLVVDL 76
           G +LL     A+A Q  AN LE VR+W +P+ TR+V D+    +YSYFTL  P RLVVDL
Sbjct: 10  GIILLLCTFFAVAAQA-ANQLESVRIWAAPESTRIVFDLSEVPNYSYFTLDGPNRLVVDL 68

Query: 77  KQSTSRAKLPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTLFKLAPTPGGQYGH 136
           K+++++  L      S ++  +R S  P K   RLV +L +   P LF L  T    YG+
Sbjct: 69  KKASTKLNLKNVDNNSKLVKGIRVSKSPTKGDLRLVIDLVKPLNPNLFSLPVT--APYGN 126

Query: 137 RLVIDMPHGKVSESSSA--STPSSPAQVSKDASQLL-GNDDIVVAIDAGHGGEDPGSIGP 193
           RLV+D+     +   SA  STP     V K+ +Q +  + DIV+AIDAGHGG+DPGSIGP
Sbjct: 127 RLVVDLEDKSATAELSAVSSTP-----VKKNVTQSVQASRDIVIAIDAGHGGDDPGSIGP 181

Query: 194 TRKYEKDITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIARRSKAHLLVSVHA 253
           +  YEK +   +SK+LA ++N  PGM+AV+ R GDYFVNLN+R+E+AR SKA LL+S+HA
Sbjct: 182 SGLYEKKVVFEISKRLASKINDTPGMRAVMIRSGDYFVNLNRRSELARNSKADLLISIHA 241

Query: 254 DAFHTPQPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLSKTNNDRNVSQTLL 313
           DAF +P PRG SV+VL+ RRAN+EI RW+E  E+ SELLGGAGE++  T+N++ ++ TLL
Sbjct: 242 DAFTSPNPRGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNTDNEQYLAMTLL 301

Query: 314 DLQFSHSQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIPSVLVETGFISNPS 373
           D+  + S   G+ VA +IL+++G V  LHK+ P +AS AVLKSPDIPS+LVETGFISNP 
Sbjct: 302 DMSMNSSMAIGHSVAGDILKDLGAVTELHKSRPESASFAVLKSPDIPSILVETGFISNPK 361

Query: 374 EEKLLIQRSHQDKLARALATAIVQYFEDNPPEGTLFANRGKAQ-------------KHKV 420
           EE+LL    HQ+ +A A+   + +YF +NPP  TL A +                 KHKV
Sbjct: 362 EERLLSSSRHQESIATAIYKGVNRYFHNNPPADTLLAKKNTTGSTVKSSSKSAGTIKHKV 421

Query: 421 QRGESIGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPAS 462
            RGES+  IA +Y V + ++ +AN +K+  + +GQ L IP S
Sbjct: 422 SRGESLSAIAQRYKVPMASIIRANGMKTDVVQLGQTLVIPES 463



 Score = 52.0 bits (123), Expect = 5e-11
 Identities = 31/73 (42%), Positives = 43/73 (58%), Gaps = 3/73 (4%)

Query: 510 NNLKSDTLVLGQKLK---ITVSLKDKPLRKHKVQRGEFLSKIADQYNVSVDSIRQANQLR 566
           NN  +DTL+  +      +  S K     KHKV RGE LS IA +Y V + SI +AN ++
Sbjct: 389 NNPPADTLLAKKNTTGSTVKSSSKSAGTIKHKVSRGESLSAIAQRYKVPMASIIRANGMK 448

Query: 567 TDQLLVGQQLIIP 579
           TD + +GQ L+IP
Sbjct: 449 TDVVQLGQTLVIP 461