Pairwise Alignments

Query, 581 a.a., N-acetylmuramoyl-L-alanine amidase from Vibrio cholerae E7946 ATCC 55056

Subject, 463 a.a., cell wall hydrolase/autolysin (RefSeq) from Shewanella sp. ANA-3

 Score =  419 bits (1076), Expect = e-121
 Identities = 219/457 (47%), Positives = 303/457 (66%), Gaps = 20/457 (4%)

Query: 20  LFGFVLLAIAPQTWANVLEGVRVWPSPDETRVVLDVKSEVDYSYFTLSSPERLVVDLKQS 79
           LF     A+A    AN LEGVR+W +P+ TRVV D+    +Y+YF+L  P RLVVDLK++
Sbjct: 13  LFLCAFFAVAAHA-ANQLEGVRIWAAPESTRVVFDLSEAPNYTYFSLDGPNRLVVDLKKA 71

Query: 80  TSRAKLPVNVTESGILSKVRASSPPEKSTFRLVFELKQKTTPTLFKLAPTPGGQYGHRLV 139
           +++  L      S ++  VR S  P K   RLV +L +     LF L  T    YG+RLV
Sbjct: 72  STKLSLKNIDNNSKLVKGVRVSKSPTKGDLRLVIDLVKPLNANLFSLPET--APYGNRLV 129

Query: 140 IDMPHGKVSESSSASTPSSPAQVSKDASQLLGNDDIVVAIDAGHGGEDPGSIGPTRKYEK 199
           +D+   K   +++A   S+P +    ++Q   + DIVVAIDAGHGG+DPGSIGP+  YEK
Sbjct: 130 VDL-EDKTLTTATAVVSSTPVKTVTQSAQ--SSRDIVVAIDAGHGGDDPGSIGPSGVYEK 186

Query: 200 DITLSVSKKLADQLNAVPGMKAVLTRRGDYFVNLNKRTEIARRSKAHLLVSVHADAFHTP 259
            + L ++K++A ++N  PGM+AV+ R GDYFVNLNKR+E+AR SKA LL+S+HADAF +P
Sbjct: 187 KVALEIAKRVASKINDTPGMRAVMIRTGDYFVNLNKRSELARNSKADLLISIHADAFTSP 246

Query: 260 QPRGGSVFVLNTRRANTEIARWVENHEQQSELLGGAGEVLSKTNNDRNVSQTLLDLQFSH 319
           QP+G SV+VL+ RRAN+EI RW+E  E+ SELLGGAGE++  T+N++ ++ TLLD+  + 
Sbjct: 247 QPKGASVWVLSMRRANSEIGRWLEQKEKHSELLGGAGEIIQNTDNEQYLAMTLLDMSMNS 306

Query: 320 SQKEGYKVATNILREMGKVAHLHKTEPVNASLAVLKSPDIPSVLVETGFISNPSEEKLLI 379
           S   G+ VA +IL+++G V  LHK+ P +ASLAVLKSPDIPS+LVETGFISNP EE+LL 
Sbjct: 307 SMAIGHSVAGDILKDLGSVTELHKSRPESASLAVLKSPDIPSILVETGFISNPKEERLLN 366

Query: 380 QRSHQDKLARALATAIVQYFEDNPPEGTLFANRGKAQ--------------KHKVQRGES 425
              HQ+ +A A+   + +YF +NPP  TL A R                  KHKV RGES
Sbjct: 367 SSRHQESIATAIYKGVSRYFHNNPPADTLLAKRNSGGTTASSSAKSSSGNIKHKVSRGES 426

Query: 426 IGLIANQYGVSVDALKKANNLKSSTISVGQLLTIPAS 462
           +  IA +Y V + ++K+AN +K+  + +GQ L IP S
Sbjct: 427 LSAIAQRYQVPMASIKRANGMKTDVVQLGQTLVIPES 463



 Score = 51.2 bits (121), Expect = 9e-11
 Identities = 24/44 (54%), Positives = 33/44 (75%)

Query: 536 KHKVQRGEFLSKIADQYNVSVDSIRQANQLRTDQLLVGQQLIIP 579
           KHKV RGE LS IA +Y V + SI++AN ++TD + +GQ L+IP
Sbjct: 418 KHKVSRGESLSAIAQRYQVPMASIKRANGMKTDVVQLGQTLVIP 461