Pairwise Alignments

Query, 478 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 596 a.a., Di- and tricarboxylate transporters from Pseudomonas stutzeri RCH2

 Score = 65.9 bits (159), Expect = 4e-15
 Identities = 49/193 (25%), Positives = 87/193 (45%), Gaps = 8/193 (4%)

Query: 271 LKLKGEFQRGWRAMLVYITFALTIVLWMTTSWHGMNTYVVAIIPLAVFTLTGIMGKEEL- 329
           + L    +R +R     I    T+ + +  ++  M    +AII  A    T  +  E+  
Sbjct: 386 ISLNAVQERAFRRDKAPIAIIATLAVMVLAAFGVMPIEGLAIIGAASVLATRCLDVEDAY 445

Query: 330 KQINWDVLWLVAGGIAIGIGLEQTGLAQALAHSIDYQS--LSPMLIVIALSLVCWLMANF 387
           K ++W +L L+ G +AI I +++ GL Q +  ++   +    P+ ++  + L+  L+   
Sbjct: 446 KAVDWKILSLIFGMLAISIAMDKVGLVQLIVQNVTTLTPWAGPLFMLSFIYLLTSLLTEM 505

Query: 388 MSNTATANLIMPIAAAIGTSMSSLEQVGGLQALLVVVAFSASLGMILPVSTPPNSLAYST 447
           +SN A A LI PIA  +   M         +A +V V F+AS     P+    N+  Y+ 
Sbjct: 506 LSNNAVAVLITPIAIGLAQHMGV-----DPRAFVVAVMFAASASFATPIGYQTNTFVYNA 560

Query: 448 GLIESKDMAKTGL 460
           G     D  K G+
Sbjct: 561 GGYRFTDFLKIGI 573



 Score = 40.8 bits (94), Expect = 1e-07
 Identities = 37/163 (22%), Positives = 72/163 (44%), Gaps = 11/163 (6%)

Query: 103 LKYTDIFSAFSSPIIILFMGGFALAIAASKYELDNNLAR--VLLKPFGHQPKYIMLGLML 160
           L   D + A    I+ L  G  A++IA  K  L   + +    L P+   P +++  + L
Sbjct: 439 LDVEDAYKAVDWKILSLIFGMLAISIAMDKVGLVQLIVQNVTTLTPWAG-PLFMLSFIYL 497

Query: 161 ITSVFSMFMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIAANTGGIATPIGTPP 220
           +TS+ +  +SN A  V++  +    +  A    +  +A V+ +  AA +   ATPIG   
Sbjct: 498 LTSLLTEMLSNNAVAVLITPI---AIGLAQHMGVDPRAFVVAVMFAA-SASFATPIGYQT 553

Query: 221 NAIALQYLTGENSIDFLSWMMMGLPFVLVQLTIAWFLLQKLFP 263
           N     ++       F  ++ +G+P  L+   +   ++   +P
Sbjct: 554 NT----FVYNAGGYRFTDFLKIGIPLNLLLWMVGTLVIPLFWP 592



 Score = 36.2 bits (82), Expect = 3e-06
 Identities = 42/197 (21%), Positives = 87/197 (44%), Gaps = 18/197 (9%)

Query: 288 ITFALTIVLWMTTSW--HGMNTYVVAIIPLAVFTLTGIMGKEE-LKQINWDVLWLVAGGI 344
           + F   +++W+  ++     +  +V  I +AV   T ++   E L  ++      +A   
Sbjct: 8   LLFVCALLIWVLVAFVRESWSPDIVVAIAVAVLLATQLLTPGEVLGVLSNSAPVTIACMF 67

Query: 345 AIGIGLEQTGLAQALAHSI-DYQSLSPMLIVIALSLVCWLMANFMSNTATANLIMPIAAA 403
            I   LE+TG   AL + + +    SP  ++  L++   +++  ++NT    ++ P+A +
Sbjct: 68  IISAALERTGCIDALGNWLGNLVGTSPTRVLFGLTITALVISACLNNTPVVAILTPVAIS 127

Query: 404 IGTSMSSLEQVGGLQALLVVVAFSASLGMILP-VSTPPNSLAYSTGLIESKDMAKTGLV- 461
           +     +         LL+ ++++  LG  L  + T  N L    G+     +   G+  
Sbjct: 128 LAKRAGTTP-----SKLLIPLSYATILGGTLTMIGTSTNILV--DGVARKAGLEPFGMFE 180

Query: 462 IGGIGL-----GIVYLM 473
           I G GL     G+VYL+
Sbjct: 181 ITGAGLIMAAAGMVYLL 197