Pairwise Alignments

Query, 478 a.a., transporter from Vibrio cholerae E7946 ATCC 55056

Subject, 608 a.a., Di- and tricarboxylate transporters from Pseudomonas stutzeri RCH2

 Score = 58.9 bits (141), Expect = 5e-13
 Identities = 44/151 (29%), Positives = 76/151 (50%), Gaps = 13/151 (8%)

Query: 330 KQINWDVLWLVAGGIAIGIGLEQTG-LAQALAHSIDYQS-LSPMLIVIALSLVCWLMANF 387
           K I+W  L L+ G +   + L++TG +A A +  +       P  ++  L L+  L+  F
Sbjct: 461 KAIHWQSLILIVGMLPFALALQKTGGIALATSGLVGLLGDAGPHALLACLFLLTALIGLF 520

Query: 388 MSNTATANLIMPIAAAIGTSMSSLEQVGGLQ-ALLVVVAFSASLGMILPVSTPPNSLAYS 446
           +SNTATA L+ P+A      +S+ EQ+G       ++VA +AS   + P+S P N+L   
Sbjct: 521 ISNTATAVLMAPVA------LSTAEQLGASPYPFAMIVALAASAAFMTPISLPVNTLVLG 574

Query: 447 TGLIESKDMAKTG----LVIGGIGLGIVYLM 473
            G     D  + G    L++  + + +V L+
Sbjct: 575 PGQYRFADFVRIGVPFTLLVMAVSVALVPLL 605



 Score = 51.2 bits (121), Expect = 1e-10
 Identities = 48/169 (28%), Positives = 79/169 (46%), Gaps = 18/169 (10%)

Query: 102 LLKYTDIFSAFSS---PIIILFMGGFALAIAASK---YELDNNLARVLLKPFGHQPKYIM 155
           L +  D+ SA+ +     +IL +G    A+A  K     L  +    LL   G  P  ++
Sbjct: 450 LFRCIDMDSAYKAIHWQSLILIVGMLPFALALQKTGGIALATSGLVGLLGDAG--PHALL 507

Query: 156 LGLMLITSVFSMFMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIA-ANTGGIAT 214
             L L+T++  +F+SNTAT V+M     P+  S  +  LG       + +A A +    T
Sbjct: 508 ACLFLLTALIGLFISNTATAVLM----APVALSTAE-QLGASPYPFAMIVALAASAAFMT 562

Query: 215 PIGTPPNAIALQYLTGENSIDFLSWMMMGLPFVLVQLTIAWFLLQKLFP 263
           PI  P N + L    G     F  ++ +G+PF L+ + ++  L+  LFP
Sbjct: 563 PISLPVNTLVL----GPGQYRFADFVRIGVPFTLLVMAVSVALVPLLFP 607



 Score = 47.8 bits (112), Expect = 1e-09
 Identities = 50/175 (28%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 309 VVAIIPLAVFTLTGIMG-KEELKQINWDVLWLVAGGIAIGIGLEQTGLAQALAH-SIDYQ 366
           VVA++ +    LTG++  +E L   +   + L+A    IG GL +TG+A  L    +   
Sbjct: 28  VVAVLAMVALPLTGVLSVQESLAGFSDPSVVLIATLFVIGDGLVRTGIAYRLGDWLMRAA 87

Query: 367 SLSPMLIVIALSLVCWLMANFMSNTATANLIMPIAAAIGTSMSSLEQVGGLQALLVVVAF 426
             S   ++I L L    + + MS+T    + +P+   I   M         + L++ +AF
Sbjct: 88  GSSETRLLILLMLAVAGLGSVMSSTGVVAIFIPVVLGIANRMKV-----SPRRLMMPLAF 142

Query: 427 SASL-GMILPVSTPPNSLAYS----TGL--IESKDMAKTGLVIGGIGLGIVYLMV 474
           +  + GM+  V+TPPN +  S     GL      D    GL I  + LGI Y++V
Sbjct: 143 AGLISGMLTLVATPPNLVVNSELRRAGLEGFAFFDFTPIGLAI--LLLGIGYMLV 195



 Score = 42.0 bits (97), Expect = 6e-08
 Identities = 32/154 (20%), Positives = 65/154 (42%), Gaps = 5/154 (3%)

Query: 98  PLGELLKYTDIFSAFSSPIIILFMGGFALAIAASKYELDNNLARVLLKPFGHQPKYIMLG 157
           PL  +L   +  + FS P ++L    F +     +  +   L   L++  G     +++ 
Sbjct: 38  PLTGVLSVQESLAGFSDPSVVLIATLFVIGDGLVRTGIAYRLGDWLMRAAGSSETRLLIL 97

Query: 158 LMLITSVFSMFMSNTATTVMMLALLGPIVASAPKGDLGIKALVLCIPIAANTGGIATPIG 217
           LML  +     MS+T    + + +   ++  A +  +  + L++ +  A    G+ T + 
Sbjct: 98  LMLAVAGLGSVMSSTGVVAIFIPV---VLGIANRMKVSPRRLMMPLAFAGLISGMLTLVA 154

Query: 218 TPPNAIALQYL--TGENSIDFLSWMMMGLPFVLV 249
           TPPN +    L   G     F  +  +GL  +L+
Sbjct: 155 TPPNLVVNSELRRAGLEGFAFFDFTPIGLAILLL 188