Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1405 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Xanthomonas campestris pv. campestris strain 8004

 Score = 1977 bits (5121), Expect = 0.0
 Identities = 980/1371 (71%), Positives = 1154/1371 (84%), Gaps = 2/1371 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLLN    Q +T +FDAIKI LASPD+IRSWS+GEVKKPETINYRTFKPERDGLFCA 
Sbjct: 1    MKDLLNLFNQQRQTLDFDAIKIALASPDLIRSWSYGEVKKPETINYRTFKPERDGLFCAA 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKR+KHRGV+CEKCG EVT  KVRR+RMGHI+LASPVAHIWFLKSL
Sbjct: 61   IFGPIKDYECLCGKYKRMKHRGVVCEKCGTEVTLAKVRRERMGHIDLASPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGL++DM LRDIERVLYFE YVVTEPG+T LER Q+LTEE+YL   +E+ D+F A M
Sbjct: 121  PSRIGLMLDMTLRDIERVLYFEAYVVTEPGLTPLERRQLLTEEQYLTARQEYNDDFDAAM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEA+ +LL ++DL +E  ++REE+ +T SETK K+LTKR+KL+EAF+ SGN+PEWM++T
Sbjct: 181  GAEAVYELLRTIDLQSEMTRLREEIASTGSETKLKRLTKRIKLIEAFLESGNRPEWMVMT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRL+RLLEL APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLELNAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            ESVDALLDNGRRGRAITG+NKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY
Sbjct: 301  ESVDALLDNGRRGRAITGTNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            L+LHQCGLPKKMALELFKPF+++KL+ RGLATTIKAAKK+VEREEA VWDIL+EVIREHP
Sbjct: 361  LKLHQCGLPKKMALELFKPFVFAKLQRRGLATTIKAAKKLVEREEAEVWDILEEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNILSPA+G+PIIVPSQDVVLGLYYM+R   N KGEGM     +E ++AY  +
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMSRALENKKGEGMVFANTSEVKRAYDNR 540

Query: 541  TAELHARVKVRITET-IKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKK 599
              ELHA+VKVRIT+  +   +GK T+ T ++DTTVGRA+L +I+P+GLP+ L N ++ KK
Sbjct: 541  VVELHAKVKVRITQVDVDTVDGKRTSGTSIVDTTVGRALLSEILPEGLPFQLANTEMTKK 600

Query: 600  QISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEE 659
             IS L+N +YR LGLKDTV+FAD++MYTG+AYA  +GVS+GIDDM++P  K   + EAE 
Sbjct: 601  NISRLINSSYRLLGLKDTVVFADKLMYTGYAYATRAGVSIGIDDMLIPDEKKGILTEAEA 660

Query: 660  EVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESF 719
            EV EIQEQ+QSGLVTAGERYNKV+DIW+ T++R+AKAMM+ + +E+V N +GE   Q+S 
Sbjct: 661  EVLEIQEQYQSGLVTAGERYNKVVDIWSRTSERIAKAMMDTIGTEKVENAKGETIDQKSM 720

Query: 720  NSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGA 779
            NS+Y+MADSGARGS AQIRQLAGMRGLMARPDGSIIETPI ANF+EGLNV +YF STHGA
Sbjct: 721  NSLYIMADSGARGSQAQIRQLAGMRGLMARPDGSIIETPIKANFREGLNVQEYFNSTHGA 780

Query: 780  RKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELA 839
            RKGLADTALKTANSGYLTRRLVDVAQDVV+TE DCGT EG++MTP +EGGDV   L E  
Sbjct: 781  RKGLADTALKTANSGYLTRRLVDVAQDVVITEVDCGTTEGLIMTPIVEGGDVVEPLKERV 840

Query: 840  LGRVVSEDILKPGTD-EVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQC 898
            LGRVV+ED+  PG D E ++ RNTLLDE W   + D SV  +KVRS ++C+S FG CA+C
Sbjct: 841  LGRVVAEDVYLPGNDEEPIVTRNTLLDEAWVAKLEDASVQSVKVRSTISCESSFGVCARC 900

Query: 899  YGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSV 958
            YGRDLARGH VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS AAA ++I  K  GSV
Sbjct: 901  YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNITVKTTGSV 960

Query: 959  KLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVA 1018
            K +N K V +  G LV  SR+ EL+++D  GR +E++KLPYG+ ++  DGDAV AG+ VA
Sbjct: 961  KFNNLKSVAHASGALVAVSRSGELSVLDGHGRERERYKLPYGATITAKDGDAVKAGQAVA 1020

Query: 1019 NWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAI 1078
            NW+ H  PI++EVAG ++F+D +DGVTV  +TD+LTGL+S E+T+   R A  K++RP +
Sbjct: 1021 NWDPHNHPIVSEVAGFIRFIDFVDGVTVIEKTDELTGLASREITDPKRRGAQAKELRPIV 1080

Query: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138
            ++VDA G D+ IP TD+PAQY LP ++IVNL DGA V VGD +A+IPQ++   +DITGGL
Sbjct: 1081 RIVDAKGNDLTIPNTDLPAQYLLPPRSIVNLQDGAAVGVGDVVAKIPQEASKTRDITGGL 1140

Query: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVF 1198
            PRVADLFEARKPK+PAILAE SG +SFGK+TKGK+RLII    G  +EE+IPK+RQ+ VF
Sbjct: 1141 PRVADLFEARKPKDPAILAERSGIISFGKDTKGKQRLIIKDTDGSEHEELIPKYRQIIVF 1200

Query: 1199 EGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQ 1258
            EGE + +G+ + DG  SP DILRL G+  +  Y+  E+Q+VYRLQGVKINDKHIE I RQ
Sbjct: 1201 EGEHVTKGETVVDGEPSPQDILRLLGVEPLAAYLVKEIQDVYRLQGVKINDKHIEVITRQ 1260

Query: 1259 MLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESF 1318
            MLRK  IT  G+S+FL GE VE  +V   N +LV   + PA+++  LLGITKASLATESF
Sbjct: 1261 MLRKVEITDQGNSKFLNGEQVERQRVIEENARLVTRNELPAKYDPVLLGITKASLATESF 1320

Query: 1319 ISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQ 1369
            ISAASFQETTRVLTEAAV G RD+LRGLKENVIVGRLIPAGTG AYH  R+
Sbjct: 1321 ISAASFQETTRVLTEAAVRGTRDNLRGLKENVIVGRLIPAGTGLAYHAGRR 1371