Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas syringae pv. syringae B728a

 Score = 2044 bits (5296), Expect = 0.0
 Identities = 1020/1399 (72%), Positives = 1186/1399 (84%), Gaps = 3/1399 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLLN LK Q + EEFDAI+IGLASP+MIRSWSFGEVKKPETINYRTFKPERDGLFCA+
Sbjct: 1    MKDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAK 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEV   KVRR+RM HIELASPVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGLLMDM LRDIERVLYFE YVV +PGMT LE+GQ+L +E+Y + LEE+GD+F A+M
Sbjct: 121  PSRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDDFDARM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEA+++LL ++DL  E  ++REE+  TNSETK KKL+KRLKL+EAF  SGN PEWM+LT
Sbjct: 181  GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+L+APDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            E+VDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFI+ KLE RGLATTIKAAKKMVERE   VWD+L EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNILSPA+G+PIIVPSQDVVLGLYYMTRE INAKGEG       E ++ +R  
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
             A LHA+VKVRI ET+   +G     T+++DTTVGRA+L+Q+VP GL Y +VNQ + KK 
Sbjct: 541  EAALHAKVKVRIHETVNDRDGGSVKNTRIVDTTVGRALLFQVVPAGLSYDVVNQPMKKKA 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            IS L+N+ YR +GLK+TVIFADQ+MYTGFAY+ +SGVS+G++D V+P  K   I  A EE
Sbjct: 601  ISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKARIIDAATEE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720
            V+EI+ Q+ SGLVT GE+YNKVID+W+  ND V+KAMM NLS E+VI+R G +  QESFN
Sbjct: 661  VKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMSNLSKERVIDRHGVEVDQESFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780
            S+YMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPITANF+EGL+VLQYFISTHGAR
Sbjct: 721  SMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840
            KGLADTALKTANSGYLTRRLVDVAQD+VVTE DCGT  G++MTPHIEGGDV   L E  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGERVL 840

Query: 841  GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG 900
            GRV++ D+ KPGT++V++P  TL+DEKW + I  NS+D++ VRS ++C++ +G CA+CYG
Sbjct: 841  GRVIARDVFKPGTEDVIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKCYG 900

Query: 901  RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL 960
            RDLARGH VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAAS  +A +S+Q KN G+V+L
Sbjct: 901  RDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTVRL 960

Query: 961  HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW 1020
            HN K V   DG LV  SR+ EL I D+FGR +E++KLPYG+++S  +GD V AG  VA W
Sbjct: 961  HNLKHVERVDGHLVAVSRSGELAIADDFGRERERYKLPYGAVISVKEGDKVDAGSIVAKW 1020

Query: 1021 EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL 1080
            + HT PI+TE+ G V +V M +G+T+ RQTD+LTG+++ EV +A  RPAAGKD+RPA+K+
Sbjct: 1021 DPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAVKM 1080

Query: 1081 VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR 1140
            V  +GKD+L+PGTD+PAQYFLP  A+V + DGA++ +GD +ARIPQ++   +DITGGLPR
Sbjct: 1081 VGLDGKDLLLPGTDVPAQYFLPANALVGVADGAQIAIGDVIARIPQETSKTRDITGGLPR 1140

Query: 1141 VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIIT-RDSGDTYEEMIPKHRQLNVFE 1199
            VADLFEAR+PKE +ILAE SGT++FGKETKGKRRL+IT  D  D YEE+IPK R LNVFE
Sbjct: 1141 VADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPNDGSDPYEELIPKWRHLNVFE 1200

Query: 1200 GERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
            GE++ RG+VI+DGP  PHDILRL G+ A+  YI NE+Q+VYRLQGVKINDKHIETI+RQM
Sbjct: 1201 GEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHIETILRQM 1260

Query: 1260 LRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFI 1319
            LRK  I  +GDS F+ G+ +E + V + N +L  E K  ++F R LLGITKASL+TESFI
Sbjct: 1261 LRKVEIAESGDSSFIKGDQMELTHVLVENERLSTEDKFVSKFTRVLLGITKASLSTESFI 1320

Query: 1320 SAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGP 1379
            SAASFQETTRVLTEAAV+GKRD LRGLKENV+VGRLIPAGTG AYH +R  KR +E   P
Sbjct: 1321 SAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSER--KRRREMDKP 1378

Query: 1380 SAEQATDNLAALLNAGFSS 1398
            +   A++  AAL  A  SS
Sbjct: 1379 TRVSASEVEAALTEALNSS 1397