Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 626 a.a., DNA-directed RNA polymerase subunit gamma from Synechocystis sp000284455 PCC 6803

 Score =  685 bits (1767), Expect = 0.0
 Identities = 334/561 (59%), Positives = 440/561 (78%), Gaps = 19/561 (3%)

Query: 8   LKAQHKTEEFDAIKIGLASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFC 58
           +KAQ +   FD +KI +ASP+ IR W           GEV KPETINYRT KPE DGLFC
Sbjct: 1   MKAQSEPR-FDYVKIAIASPERIRQWGERTLPNGTVVGEVTKPETINYRTLKPEMDGLFC 59

Query: 59  ARIFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLK 118
            +IFGP KD+EC CGKYKR++HRG++CE+CGVEVT+++VRR RMG+I+LA+PV H+W+LK
Sbjct: 60  EKIFGPSKDWECWCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGYIKLAAPVTHVWYLK 119

Query: 119 SLPSRIGLLMDMPLRDIERVLYFEMYVVTEPG-MTDLERGQMLTEEEYLDRLEEWGDE-- 175
            +PS + +L+DM LRD+E+++YF  YVV  PG  ++L+  Q+LTE+++++  ++   E  
Sbjct: 120 GIPSYLSILLDMALRDVEQIVYFNAYVVLNPGNASNLQYKQLLTEDQWVEIEDQIYAEDS 179

Query: 176 ----FTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASG 231
                   +GAEA++ LLA + L   AE++REE+  +  + KR KL KRL++++ F+A+ 
Sbjct: 180 ELEGIEVGIGAEAVQRLLAELQLEEVAEKLREEILASKGQ-KRAKLIKRLRVIDNFIATH 238

Query: 232 NKPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDII 291
           ++ EWM L V+PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL E+ AP+II
Sbjct: 239 SQAEWMTLDVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEII 298

Query: 292 VRNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSG 351
           VRNEKRMLQE+VDAL+DNGRRGR + G+N R LKSL+D+I+GKQGRFRQNLLGKRVDYSG
Sbjct: 299 VRNEKRMLQEAVDALIDNGRRGRTVVGANNRALKSLSDIIEGKQGRFRQNLLGKRVDYSG 358

Query: 352 RSVITVGPYLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDI 411
           RSVI VGP L+++QCGLP++MA+ELF+PF+  +L   G+   IKAAKK++ + +  +W +
Sbjct: 359 RSVIVVGPNLKIYQCGLPREMAIELFQPFVIHRLIKLGIVNNIKAAKKLILKGDPQIWSV 418

Query: 412 LDEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVP 471
           L+EVI  HPV+LNRAPTLHRLGIQAFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVHVP
Sbjct: 419 LEEVITGHPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVP 478

Query: 472 LTLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINA-KGEGMYLTGP 530
           L+LEAQ EAR LM++ +N+LSPA+G PI+ PSQD+VLG YY+T E  NA KG G Y  G 
Sbjct: 479 LSLEAQCEARLLMLACHNVLSPATGKPIVAPSQDMVLGCYYLTAENPNAQKGAGRYFAGI 538

Query: 531 AEAEKAYRTKTAELHARVKVR 551
            +A +AY     +LH+++ +R
Sbjct: 539 EDALRAYDHGQVDLHSQIWIR 559