Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1317 a.a., DNA-directed RNA polymerase subunit beta'' from Synechocystis sp000284455 PCC 6803

 Score =  322 bits (824), Expect = 2e-91
 Identities = 193/471 (40%), Positives = 270/471 (57%), Gaps = 29/471 (6%)

Query: 593  NQKLGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYT 652
            N  + K ++  L+  AYR+ G       AD++   GF +A  +GVS+ +DD+ +P  K  
Sbjct: 5    NYTIDKGRLKKLIALAYRRYGSARCSQLADELKELGFRFATKAGVSISVDDLTIPPEKKQ 64

Query: 653  EIAEAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGE 712
             +  AE+E+R  +E++  G +T  ER+ KVID W  T+        E L  + V+N +  
Sbjct: 65   MLEAAEKEIRTTEERYARGEITEVERFQKVIDTWNGTS--------EELKDQVVVNFR-- 114

Query: 713  QEKQESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQY 772
              K +  NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI  NF+EGL V +Y
Sbjct: 115  --KTDPLNSVYMMAFSGARGNMSQVRQLVGMRGLMADPQGEIIDLPIKTNFREGLTVTEY 172

Query: 773  FISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVK 832
             IS++GARKGL DTAL+TA+SGYLTRRLVDV+QDV+V E DCGT   + +T   +G  VK
Sbjct: 173  VISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIVREQDCGTERSLRVTAMTDGDQVK 232

Query: 833  VALTELALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDF 892
            ++L +   GR++++D++ P   E++  RN  +DE     I     D++ VRS +TC++  
Sbjct: 233  ISLADRLFGRLLAKDVVGP-DGEIIAKRNDEIDEALANRI-AAVTDEVYVRSPLTCEAAR 290

Query: 893  GCCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQA 952
              C  CYG  LA GH V+ GEAVG+IAAQSIGEPGTQLTMRTFH GG  +   A    +A
Sbjct: 291  SVCQNCYGWSLAHGHKVDLGEAVGIIAAQSIGEPGTQLTMRTFHTGGVFTGEVARQE-KA 349

Query: 953  KNNGSVK----LHNAKFVTNKDGKLVITSRASELTIIDEFGR-TKEKHKLPYGSMLSKAD 1007
              +G+VK    L   K  T           A +L    E  +   + + L  GS+L   D
Sbjct: 350  PEDGTVKWGKGLSTRKVRTRHGEDAEQVEIAGDLIWKGEGKKAATQTYSLTPGSLLFVQD 409

Query: 1008 GDAVAAGE---------TVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQ 1049
            G  V AG+         T  + E  T  +  ++AG V F  ++      RQ
Sbjct: 410  GQTVTAGQLMTEISLSKTQRSTERATKDVAGDLAGEVLFDRLVPEEKTDRQ 460



 Score =  245 bits (625), Expect = 2e-68
 Identities = 166/417 (39%), Positives = 221/417 (52%), Gaps = 33/417 (7%)

Query: 981  ELTIIDEFGRTKEKHKLPYG----SMLSKADGDAVAAGETVANWEAHTMPIITEVAGRVQ 1036
            +L I++     +++   P G    + L   DGD +  G  VA  E       T V G  +
Sbjct: 815  QLVILESLVLRRDQESDPLGGASKTRLLVQDGDQIPPGAVVARTEIQCKEAGT-VRGIKE 873

Query: 1037 FVDMIDGVTVSRQTDDLT-GLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDVLIPGTDM 1095
              + I  V + R  D L   L S+   +      AG+++ P +KL + +GK + I G   
Sbjct: 874  GQESIRRVLLERAADRLVVDLPSAPEVKPGQLLVAGQELVPGVKL-EESGKVLEINGKGD 932

Query: 1096 PAQYFL---------PGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFE 1146
              Q  L         PG A+++++DG  V  GD L  +  +     DI  GLPR+ +L E
Sbjct: 933  NYQLVLRRARPYRVSPG-AVLHIEDGDLVQRGDNLVLLVFERAKTGDIVQGLPRIEELLE 991

Query: 1147 ARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIERG 1206
            ARKPKE  +LA   G             + +  D G   E  +   +   V +G+RI+ G
Sbjct: 992  ARKPKEACVLARAPGVCQVEYLEDESVDIKVVEDDGTVSEYPLLPGQNAMVTDGQRIDVG 1051

Query: 1207 DVIADGPESPHDIL----------------RLRGIHAVTTYIANEVQEVYRLQGVKINDK 1250
              + DG  +PH+IL                 LRG+ A   ++ NEVQ VY+ QGV I+DK
Sbjct: 1052 HALTDGYNNPHEILDVFFSYYVDKDGCYQAALRGLQAAQKFLVNEVQTVYQSQGVDISDK 1111

Query: 1251 HIETIVRQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITK 1310
            HIE IVRQM  K  I   GD+  LPGE VE  QV+  N  +   G  PAR+   LLGITK
Sbjct: 1112 HIEVIVRQMTAKVRIDDGGDTTMLPGELVELRQVEQVNEAMGITGSAPARYTPVLLGITK 1171

Query: 1311 ASLATESFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQD 1367
            ASL T+SFISAASFQETTRVLTEAA+ GK D LRGLKENVI+GRLIPAGTGF+ H++
Sbjct: 1172 ASLNTDSFISAASFQETTRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFSSHEE 1228