Pairwise Alignments
Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056
Subject, 1318 a.a., DNA-directed RNA polymerase subunit beta' from Synechococcus elongatus PCC 7942
Score = 349 bits (896), Expect = e-100
Identities = 241/709 (33%), Positives = 359/709 (50%), Gaps = 74/709 (10%)
Query: 593 NQKLGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYT 652
N+ + KKQ+ L+ + G T + AD + GF YA +GVS+ IDD+ VP +K
Sbjct: 12 NRVIDKKQLKKLIGWTFAHYGTAKTAVVADDLKALGFRYATRAGVSISIDDLKVPGSKAE 71
Query: 653 EIAEAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGE 712
+ AE+ ++E ++++ G +T ER+ KVID WA+TND + +++N
Sbjct: 72 LLESAEKRIQETEDRYTRGEITEVERFQKVIDTWANTNDELTDRVVKNF----------- 120
Query: 713 QEKQESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQY 772
+ + NS+YMMA SGARG+ +Q+RQL GMRGLMA P G II+ PI NF+EGL V +Y
Sbjct: 121 -RESDPLNSVYMMAFSGARGNISQVRQLVGMRGLMANPQGEIIDLPIKTNFREGLTVTEY 179
Query: 773 FISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVK 832
IS++GARKGL DTAL+TA+SGYLTRRLVDV+QDV++ E DCGT G+ + +G +
Sbjct: 180 IISSYGARKGLVDTALRTADSGYLTRRLVDVSQDVIIHEVDCGTSRGLFVEAMTDGDRIL 239
Query: 833 VALTELALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDF 892
+ +++ LGRV +E +L P TDEVL ++E I + ++KVRS +TC++
Sbjct: 240 IPISQRLLGRVTAEAVLDPSTDEVLAEAGQDINEDLANRIEKAGIKKVKVRSPLTCEAAR 299
Query: 893 GCCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQA 952
C +CYG LA +V+ GEAVG+IAAQSIGEPGTQLTMRTFH GG T ++A
Sbjct: 300 SVCQKCYGWSLAHAQMVDMGEAVGIIAAQSIGEPGTQLTMRTFHTGG-VFTGETARLLRA 358
Query: 953 KNNGSVKL---HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGD 1009
G++KL + + G+ + + A+ +++ GR KE + GS + DGD
Sbjct: 359 PVAGTIKLGKKARTRPYRTRHGEEALLAEANFDLVLEGKGR-KETFAILQGSTIFVQDGD 417
Query: 1010 AVAA----------GETVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDD------- 1052
VAA G T E T + T++AG ++F D++ RQ +
Sbjct: 418 KVAAEAILAEVPVSGRTKRTVEKATKDVATDLAGEIRFQDIVPEEKTDRQGNTTRIAQRG 477
Query: 1053 -----LTG-----LSSSEVTEAAARPAAGKDMRPAIKLVDANGKDVLI-----PGTDMPA 1097
L G L +E T D+ KL G V + T
Sbjct: 478 GLLWVLAGDVYNLLPGAEPTVKNGDRVEVGDVLAETKLTTERGGTVRMGEDNGSSTHREV 537
Query: 1098 QYFLPGKAIVNLDDGAEVNVGDTLARIPQKSG---------GNKDITGGLPRVADLFEAR 1148
+ + AE + G I K G G K TG + VA+L ++R
Sbjct: 538 EIITASVVLDTATVKAEASQGREHYVIETKGGQRFNLLAAPGTKVTTGHV--VAELIDSR 595
Query: 1149 KPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTY----EEMIPKHRQLNVFEGERIE 1204
+ L ++SG V K+ + K + G T EE ++ +++ +E
Sbjct: 596 YRTQTGGLLKYSG-VEISKKGRAKAKQGYEVTKGGTLLWIPEETHEVNKDISLL---NVE 651
Query: 1205 RGDVIADGPESPHDIL-RLRGIHAVTTYIANEVQEVYRLQGVKINDKHI 1252
G ++ G E DI + GI +VT + ++ R +K D H+
Sbjct: 652 DGQLVEAGTEVVKDIFCQTTGIVSVT-----QNNDILREIVIKPGDVHV 695
Score = 215 bits (548), Expect = 2e-59
Identities = 123/280 (43%), Positives = 159/280 (56%), Gaps = 17/280 (6%)
Query: 1105 AIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHSGTVS 1164
A+++++D V GD L + + DI GLPR+ +L EARKPKE ILA G
Sbjct: 962 AVLHVEDKGLVQRGDNLVLLVFERAKTGDIIQGLPRIEELLEARKPKEACILARRPGVAH 1021
Query: 1165 FGKETKGKRRLIITRDSGDTYEEMIPKHRQLNVFEGERIERGDVIADGPESPHDILR--- 1221
+ + G + + + L + +GE ++ G + DGP +PHD+L
Sbjct: 1022 INYSDDDAIDIQVIEADGTQADYPVGPGQPLIISDGETVDAGQALTDGPANPHDLLEIYY 1081
Query: 1222 --------------LRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITF 1267
L + V + NEVQ VY+ QG+ I+DKHIE IVRQM K I
Sbjct: 1082 DYFREQLGEDYEAALESLRRVQALLVNEVQSVYQSQGIDISDKHIEVIVRQMTSKVRIDD 1141
Query: 1268 AGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFISAASFQET 1327
GD+ LPGE E +V +N + G PA+F LLGITKASL T SFISAASFQET
Sbjct: 1142 GGDTIMLPGELHELREVYNSNNTMALTGMAPAQFTPVLLGITKASLNTNSFISAASFQET 1201
Query: 1328 TRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQD 1367
TRVLTEAA+ GK D LRGLKENVI+GRLIPAGTGF +++
Sbjct: 1202 TRVLTEAAIEGKSDWLRGLKENVIIGRLIPAGTGFKAYEE 1241