Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 624 a.a., DNA-directed RNA polymerase subunit gamma from Synechococcus elongatus PCC 7942

 Score =  696 bits (1795), Expect = 0.0
 Identities = 334/562 (59%), Positives = 443/562 (78%), Gaps = 18/562 (3%)

Query: 15  EEFDAIKIGLASPDMIRSWS---------FGEVKKPETINYRTFKPERDGLFCARIFGPV 65
           + FD +KI LASP+ IR W           GEV KPETINYRT KPE DGLFC +IFGP 
Sbjct: 6   QRFDYVKIALASPERIRQWGERTLPNGQVVGEVTKPETINYRTLKPEMDGLFCEKIFGPA 65

Query: 66  KDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPSRIG 125
           KD+EC CGKYKR++HRG++CE+CGVEVT+++VRR RMG I+LA+PVAH+W+LK +PS I 
Sbjct: 66  KDWECHCGKYKRVRHRGIVCERCGVEVTESRVRRHRMGFIKLAAPVAHVWYLKGIPSYIA 125

Query: 126 LLMDMPLRDIERVLYFEMYVVTEPGM-TDLERGQMLTEEEYLDRLEE-WGDEFTAK---- 179
           +L+DMPLRD+E+++YF  YVV  PG  ++L+  Q+L E+++++  ++ + +E   +    
Sbjct: 126 ILLDMPLRDVEQIVYFNSYVVLNPGNHSELQYKQLLNEDQWMEIEDQIYAEESDLEGIEV 185

Query: 180 -MGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMI 238
            +GAEA++ LL  ++L  E+E++R+E+  +  + KR KL KRL++++ F+ + ++PEWM+
Sbjct: 186 GIGAEALQQLLQDLNLNEESEKLRQEIAESKGQ-KRAKLIKRLRVIDNFIGTESRPEWMV 244

Query: 239 LTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRM 298
           L V+PV+PPDLRP+V LDGGRFATSDLNDLYRRVINRNNRL RL E+ AP+IIVRNEKRM
Sbjct: 245 LNVIPVIPPDLRPMVQLDGGRFATSDLNDLYRRVINRNNRLARLQEILAPEIIVRNEKRM 304

Query: 299 LQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVG 358
           LQE+VDAL+DNGRRGR + G+N RPLKSL+D+I+GKQGRFRQNLLGKRVDYSGRSVI VG
Sbjct: 305 LQEAVDALIDNGRRGRTVVGANNRPLKSLSDIIEGKQGRFRQNLLGKRVDYSGRSVIVVG 364

Query: 359 PYLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIRE 418
           P L++HQCGLP++MA+ELF+PF+  +L        IK AKK++++ + ++WD+L+EVI  
Sbjct: 365 PNLKIHQCGLPREMAIELFQPFVIHRLIKNHSINNIKQAKKLIQKNDPLIWDVLEEVIEG 424

Query: 419 HPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQL 478
           HPV+LNRAPTLHRLGIQAFEP+L+EG+AIQLHPLVC A+NADFDGDQMAVHVPL++EAQ 
Sbjct: 425 HPVMLNRAPTLHRLGIQAFEPILVEGRAIQLHPLVCPAFNADFDGDQMAVHVPLSIEAQA 484

Query: 479 EARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINA-KGEGMYLTGPAEAEKAY 537
           EAR LM+++ NILSPA+G PI+ PSQD+VLG YY+T E   A KG G Y     +A +A+
Sbjct: 485 EARMLMLASGNILSPATGQPIVTPSQDMVLGCYYLTAENPGAQKGAGRYFANLEDAIRAF 544

Query: 538 RTKTAELHARVKVRITETIKHE 559
              + +LHA V VR    ++ E
Sbjct: 545 EQGSVDLHAWVWVRFDGEVESE 566