Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Sinorhizobium meliloti 1021

 Score = 1605 bits (4156), Expect = 0.0
 Identities = 818/1404 (58%), Positives = 1048/1404 (74%), Gaps = 23/1404 (1%)

Query: 2    KDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61
            ++++N    Q   + FD+I+I +ASP+ I SWS+GE+KKPETINYRTFKPERDGLFCARI
Sbjct: 3    QEVMNLFNPQVPAQTFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARI 62

Query: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLP 121
            FGP+KDYECLCGKYKR+K++G+ICEKCGVEVT ++VRR+RMGHIELA+PVAHIWFLKSLP
Sbjct: 63   FGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKSLP 122

Query: 122  SRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAKM 180
            SRI  L+DM L+DIERVLYFE Y+VTEPG+T L+  Q+L+EEEY+  ++E+G D+FTA +
Sbjct: 123  SRIATLLDMTLKDIERVLYFENYIVTEPGLTSLKENQLLSEEEYMIAVDEFGEDQFTAMI 182

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEAI ++LASM+L   A  +R E+  T S+ K+KKL KRLK+VE F+ SGN+PEWMI+ 
Sbjct: 183  GAEAIYEMLASMNLEKIAGDLRSEMAETTSDLKQKKLMKRLKIVENFMESGNRPEWMIMK 242

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            V+PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL AP II+RNEKRMLQ
Sbjct: 243  VVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRMLQ 302

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            ESVDAL DNGRRGR ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI  GP 
Sbjct: 303  ESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTGPE 362

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            L+LHQCGLPKKMALELFKPFIY++L+ +G ++T+K AKK+VE+E+  VWDILDEVIREHP
Sbjct: 363  LKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIREHP 422

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEP+L+EGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 423  VLLNRAPTLHRLGIQAFEPILVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEA 482

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNIL PA+G PIIVPSQD+VLGLYY++    N  GEGM  +   E   A  TK
Sbjct: 483  RVLMMSTNNILHPANGAPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDMGELHHALETK 542

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPK--GLPYSLVNQKLGK 598
               LHA+++ R  +T+  E   +   +K+ +TT GR ++ +++PK   +P+   NQ++ K
Sbjct: 543  AVTLHAKIRGRY-KTVDAEGNPV---SKIYETTPGRMIIGELLPKNPNVPFETCNQEMTK 598

Query: 599  KQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAE 658
            K IS +++  YR  G KDTVIF D+IM  GF++A  +G+S G DDMV+P  K   + + E
Sbjct: 599  KNISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDTKVKIVGDTE 658

Query: 659  EEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQES 718
              V+E ++Q+  GL+T GE+YNKV+D W    ++VA+ MM  + + +      +  +Q+ 
Sbjct: 659  ALVKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEF----DDSGRQKP 714

Query: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHG 778
             NSIYMM+ SGARGS  Q+RQL GMRGLMA+P G IIETPI +NFKEGL V +YF STHG
Sbjct: 715  MNSIYMMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHG 774

Query: 779  ARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTEL 838
            ARKGLADTALKTANSGYLTRRLVDVAQD +VT  DCGT +G+ MT  ++ G V  ++ + 
Sbjct: 775  ARKGLADTALKTANSGYLTRRLVDVAQDCIVTHTDCGTDKGLTMTAIVDAGQVVASIGQR 834

Query: 839  ALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQC 898
             LGR   ++I  P T E ++    ++ E     I    +  +++RS +TC+   G C  C
Sbjct: 835  ILGRTALDNIDNPVTGERIVDAGKMILEPDVVAIEKAGIQSVRIRSALTCEIQTGVCGVC 894

Query: 899  YGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSV 958
            YGRDLARG  VN GEAVGVIAAQSIGEPGTQLTMRTFH+GG A T   ++ ++A   G+V
Sbjct: 895  YGRDLARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTA-TVVDQSFLEASYEGTV 953

Query: 959  KLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVA 1018
            ++ N   + N DG LV   R   + I+DE G  +   ++ YGS +   DGD V  G+  A
Sbjct: 954  QIKNRNMLRNSDGVLVAMGRNMAIQILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRFA 1013

Query: 1019 NWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAI 1078
             W+ +T P++TEV G V F D++DG++V   TD+ TG++  +V +  + P  G D++PAI
Sbjct: 1014 EWDPYTRPMMTEVEGTVHFEDVVDGISVLESTDESTGITKRQVIDWRSTP-RGTDLKPAI 1072

Query: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138
             + D NG ++        A++ L   AI++++ G +V+ GD LAR P +S   KDITGGL
Sbjct: 1073 VIKDKNG-NIAKLARGGEARFMLSVDAILSVEPGQKVSQGDVLARSPLESAKTKDITGGL 1131

Query: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLII--TRDSGDTYEEMIPKHRQLN 1196
            PRVA+LFEAR+PK+ AI+AE  GT+ FG++ K KRR++I    D  +  E +IPK +  +
Sbjct: 1132 PRVAELFEARRPKDHAIIAEIDGTIRFGRDYKNKRRVMIEPAEDGVEPVEYLIPKGKPFH 1191

Query: 1197 VFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIV 1256
            + +G+ IE+GD I DG  +PHDIL ++G+ A+ +Y+ NE+QEVYRLQGV INDKHIE IV
Sbjct: 1192 LQDGDYIEKGDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIV 1251

Query: 1257 RQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATE 1316
            RQML+K  IT AGDS ++ G+ V+  +++  N  L+ EGK+PA  E  LLGITKASL T 
Sbjct: 1252 RQMLQKVEITDAGDSTYIVGDNVDRIELEDVNDSLLAEGKKPAFGEPVLLGITKASLQTP 1311

Query: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQ 1376
            SFISAASFQETT+VLTEAAV+GK D+L+GLKENVIVGRLIPAGTG    Q R+   A+++
Sbjct: 1312 SFISAASFQETTKVLTEAAVAGKTDNLQGLKENVIVGRLIPAGTGGTMTQIRRIATARDE 1371

Query: 1377 -------QGPSAEQATDNLAALLN 1393
                   +G  AE AT  LA + N
Sbjct: 1372 LILEERRKGTGAESATPMLADMAN 1395