Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1404 a.a., DNA-directed RNA polymerase subunit beta' (RefSeq) from Shewanella amazonensis SB2B

 Score = 2237 bits (5796), Expect = 0.0
 Identities = 1126/1404 (80%), Positives = 1244/1404 (88%), Gaps = 5/1404 (0%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            MKDLL FLK Q KTEEF+ IKIGLASPD+IRSWSFGEVKKPETINYRTFKPER+GLFCAR
Sbjct: 1    MKDLLKFLKQQGKTEEFEGIKIGLASPDLIRSWSFGEVKKPETINYRTFKPEREGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRR+RMGHIELASPVAHIWFLKSL
Sbjct: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPVAHIWFLKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWGDEFTAKM 180
            PSRIGL++DM LRDIERVLYFE YVV EPGMT LERGQMLTEE YLD LEE+GDEF AKM
Sbjct: 121  PSRIGLMLDMTLRDIERVLYFESYVVIEPGMTSLERGQMLTEENYLDALEEYGDEFEAKM 180

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEA+ DLL ++DL  E EQMREEL + NSET+RKK+TKRLKL+EAF  SGNKPEWMIL 
Sbjct: 181  GAEAVLDLLRAIDLEKEIEQMREELPSINSETRRKKVTKRLKLIEAFYTSGNKPEWMILK 240

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLL+LAAPDIIVRNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 
Sbjct: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            LRLHQCGLPKKMALELFKPFIY KLE RGLATTIKAAKKMVERE A VWD+LDEVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLEGRGLATTIKAAKKMVEREVAEVWDVLDEVIREHP 420

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            V+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA
Sbjct: 421  VMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNILSPA+G+PIIVPSQDVVLGLYY++RE++N +GE M     AEAEKAYR  
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYISRERVNGRGEAMAFESVAEAEKAYRVG 540

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLVNQKLGKKQ 600
             AELHARVKVRITETI  ENG+ T + +++DTTVGRA+L QI+P GL + LVNQ +GKKQ
Sbjct: 541  AAELHARVKVRITETIIGENGERTKQRRIVDTTVGRAILSQILPAGLSFDLVNQDMGKKQ 600

Query: 601  ISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEE 660
            IS LLN  YR+LGLKDTVIFADQ+MYTGF YA +SG SVGI+DMV+P  KY+ +A+AE E
Sbjct: 601  ISKLLNTCYRQLGLKDTVIFADQLMYTGFQYATISGASVGINDMVIPEEKYSLVADAEAE 660

Query: 661  VREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFN 720
            V EIQEQFQSGLVTAGERYNKVIDIWAS N++V+KAMMENLSSE VINR GE+EKQ+SFN
Sbjct: 661  VIEIQEQFQSGLVTAGERYNKVIDIWASANEKVSKAMMENLSSETVINRHGEEEKQKSFN 720

Query: 721  SIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGAR 780
            SIYMMADSGARGSAAQIRQLAGMRGLMA+PDGSIIETPI ANF+EGLNVLQYFISTHGAR
Sbjct: 721  SIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR 780

Query: 781  KGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELAL 840
            KGLADTALKTANSGYLTRRLVDVAQD+V+ E DCG  EG+ M P IEGGDV   L E  L
Sbjct: 781  KGLADTALKTANSGYLTRRLVDVAQDLVIIEDDCGATEGLSMKPLIEGGDVVEPLRERVL 840

Query: 841  GRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYG 900
            GRVV+ED++ PGTDEVL PRNTLLDE WC  +  +SVD+++VRSV+TC++DFG CA+CYG
Sbjct: 841  GRVVAEDVMYPGTDEVLAPRNTLLDEAWCDKLEQHSVDEVQVRSVITCETDFGVCAKCYG 900

Query: 901  RDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKL 960
            RDLARGH++N GEA+GV+AAQSIGEPGTQLTMRTFHIGGAAS A+AENS+Q KN G++KL
Sbjct: 901  RDLARGHIINMGEAIGVVAAQSIGEPGTQLTMRTFHIGGAASRASAENSVQVKNAGTLKL 960

Query: 961  HNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANW 1020
            HNAK+VTN DGKLVI SR+SEL IIDE GR KE++K+PYG++L   +G  V AG+ +ANW
Sbjct: 961  HNAKYVTNSDGKLVIVSRSSELAIIDELGREKERYKVPYGTVLDTKEGAEVNAGQIIANW 1020

Query: 1021 EAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKL 1080
            + HT PIITEVAG ++FVDMIDGVT++RQTD+LTGLSS  V +   R +AGK+MRPA++L
Sbjct: 1021 DPHTHPIITEVAGSIKFVDMIDGVTITRQTDELTGLSSIVVLDVGQRTSAGKEMRPAVRL 1080

Query: 1081 VDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPR 1140
            VD NG D+ IPGTD+PAQYFLPG AIVNLDD A+++VGD LARIPQ+S   +DITGGLPR
Sbjct: 1081 VDDNGNDLTIPGTDVPAQYFLPGNAIVNLDDNAKISVGDALARIPQESSKTRDITGGLPR 1140

Query: 1141 VADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIIT-RDSGDTYEEMIPKHRQLNVFE 1199
            VADLFEAR+PKEPAILAE SGT+SFGKETKGKRRL+IT  D GD YEEMIPK R LNVFE
Sbjct: 1141 VADLFEARRPKEPAILAEISGTISFGKETKGKRRLVITPNDGGDAYEEMIPKWRNLNVFE 1200

Query: 1200 GERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQM 1259
            GE++ERG+VIADGPES HDILRLRGIH V  YI NEVQ+VYRLQGVKINDKHIE I+RQM
Sbjct: 1201 GEKVERGEVIADGPESAHDILRLRGIHNVANYIVNEVQDVYRLQGVKINDKHIEVIIRQM 1260

Query: 1260 LRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFI 1319
            LRKC IT AGDSEFL GE VE ++VKIANR L   GK+PA+FERELLGITKASLATESFI
Sbjct: 1261 LRKCIITQAGDSEFLEGEQVEVARVKIANRDLEAAGKQPAKFERELLGITKASLATESFI 1320

Query: 1320 SAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRA--QEQQ 1377
            SAASFQETTRVLTEAAV GK D+LRGLKENVIVGRLIPAGTGFAYH++R   RA  +E  
Sbjct: 1321 SAASFQETTRVLTEAAVGGKSDNLRGLKENVIVGRLIPAGTGFAYHKNRAKARASGEETA 1380

Query: 1378 GP--SAEQATDNLAALLNAGFSSD 1399
             P  +A +A  NLA LLN   S +
Sbjct: 1381 APTITASEAEQNLADLLNLAGSQE 1404