Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1393 a.a., DNA-directed RNA polymerase (NCBI) from Rhodospirillum rubrum S1H

 Score = 1647 bits (4266), Expect = 0.0
 Identities = 834/1380 (60%), Positives = 1048/1380 (75%), Gaps = 19/1380 (1%)

Query: 1    MKDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCAR 60
            M +L+        T+ FD IKI +ASP+ IRSWSFGE+KKPETINYRTFKPERDGLFCAR
Sbjct: 1    MNELMKIFGQVSGTQAFDQIKISIASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCAR 60

Query: 61   IFGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSL 120
            IFGP+KDYECLCGKYKR+K+RG+ICEKCGVEVT +KVRR+RMGHIELA+PVAHIWF+KSL
Sbjct: 61   IFGPIKDYECLCGKYKRMKYRGIICEKCGVEVTLSKVRRERMGHIELAAPVAHIWFMKSL 120

Query: 121  PSRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAK 179
            PSR+GLL+DM L+D+ERVLYFE YVV EPG+T L+  +ML+EE+Y   +EE+G D FTA 
Sbjct: 121  PSRVGLLIDMTLKDLERVLYFENYVVVEPGLTPLKLHEMLSEEQYQRAVEEYGEDSFTAG 180

Query: 180  MGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMIL 239
            +GAEAI+D+L S+DL      M+ EL  T SE KRKKL KRLK+V+AF+ SG +PEWMIL
Sbjct: 181  IGAEAIRDMLMSIDLETLKTDMKVELRDTTSEAKRKKLVKRLKIVDAFIESGCRPEWMIL 240

Query: 240  TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRML 299
             V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRML
Sbjct: 241  EVIPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRML 300

Query: 300  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGP 359
            QESVDAL DNGRRGRAITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVDYSGRSVI VGP
Sbjct: 301  QESVDALFDNGRRGRAITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 360  YLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREH 419
             L+LHQCGLPKKMALELFKPF+YSKLE    ATTIKAAK+MVE+E   VWDIL+EVIREH
Sbjct: 361  ELKLHQCGLPKKMALELFKPFVYSKLEQYHYATTIKAAKRMVEKERPEVWDILEEVIREH 420

Query: 420  PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLE 479
            PV+LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC A+NADFDGDQMAVHVPL+LEAQLE
Sbjct: 421  PVMLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLE 480

Query: 480  ARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRT 539
            AR LMMSTNNILSPA+G PIIVP+QD+VLGLYY+T ++   KGEGM      E E A + 
Sbjct: 481  ARVLMMSTNNILSPANGKPIIVPTQDIVLGLYYLTLDREGEKGEGMAFASLNEIEHALQA 540

Query: 540  KTAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPK--GLPYSLVNQKLG 597
            +   L ARVK R+  TI  ENG     T  ++TT GR +L +++P+   LP+S++N+ L 
Sbjct: 541  RVVSLQARVKARL-HTI-DENGAPVIRT--VETTPGRMLLSRLLPRHTALPFSVINRLLR 596

Query: 598  KKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEA 657
            KK I+++++  YR  G K+TVIF D++M  G+A+AA +G+S G DD+V+P  K   +A+ 
Sbjct: 597  KKDITDVIDTVYRHCGQKETVIFCDRVMQLGYAHAARAGISFGKDDLVIPPTKAQLVADT 656

Query: 658  EEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQE 717
            + EV+E ++Q+Q GL+T GE+YNKV+D W+   +RVA  MM+ ++         + E  +
Sbjct: 657  DAEVKEFEQQYQDGLITQGEKYNKVVDAWSHCTERVADEMMKEIA---------KIEPGK 707

Query: 718  SFNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTH 777
              NS+YMMA SGARGSAAQ++QLAGMRGLMA+P G IIETPI +NFKEGL VL+YF STH
Sbjct: 708  PVNSVYMMAHSGARGSAAQMKQLAGMRGLMAKPSGEIIETPIVSNFKEGLTVLEYFNSTH 767

Query: 778  GARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTE 837
            GARKGLADTALKTANSGYLTRRLVDVAQD ++   DCGT  G+   P +EGG +  +L E
Sbjct: 768  GARKGLADTALKTANSGYLTRRLVDVAQDAIIVIEDCGTSRGITAMPVVEGGQIIASLGE 827

Query: 838  LALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQ 897
              LGR  +EDI K     +++P   +++E   +++ +  ++Q+++RSV+TC+++ G C +
Sbjct: 828  RVLGRTAAEDI-KDTDGTIIVPLGKMIEEHDVELLEEAGIEQVRIRSVLTCEAETGICGK 886

Query: 898  CYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGS 957
            CYGRDLARG  VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAA   A ++S++A  +G 
Sbjct: 887  CYGRDLARGTKVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQRGAEQSSVEAAFDGK 946

Query: 958  VKLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETV 1017
            + + N   V   +  L++ SR  E+ I DE GR K ++++PYGS L   +G  V  G+ +
Sbjct: 947  IVMENRAVVGTSENVLIVMSRNCEVKITDEAGREKARYRIPYGSKLLTDEGRMVTKGDRL 1006

Query: 1018 ANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPA 1077
            A W+ +T+PIITE  G   + D+++GV+V   TD+ TG+SS  V E    P  G D++P 
Sbjct: 1007 AEWDPYTVPIITEREGIAIYNDLVEGVSVREVTDEATGISSKVVVEWKNMP-KGTDLKPR 1065

Query: 1078 IKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGG 1137
            I L D  G+ + +    + A+YF+    I+++++G  V  GD L RIP++    +DITGG
Sbjct: 1066 ITLRDDRGEGITL-ANGLEARYFMSVDTILSVENGQRVKAGDVLGRIPREGSKTRDITGG 1124

Query: 1138 LPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSGDTYEEMIPKHRQLNV 1197
            LPRVA+LFEARKPK+ AI++E  G V FGK+ K KRRL++  + GD  E ++PK + L +
Sbjct: 1125 LPRVAELFEARKPKDHAIISEIDGRVEFGKDYKSKRRLLVVPEDGDPVEYLLPKGKHLTI 1184

Query: 1198 FEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVR 1257
             EG+ + +GD + DG   PHDILR+ G+ A+  Y+  E+Q+VYRLQGVKINDKHIE I R
Sbjct: 1185 QEGDYVRKGDPLMDGNPVPHDILRVMGVEALANYLIKEIQDVYRLQGVKINDKHIEVISR 1244

Query: 1258 QMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATES 1317
            QML+K  IT  GD+ FL GE ++ +  +I N K ++E   PA     L GITKASL T S
Sbjct: 1245 QMLQKVEITEPGDTTFLVGELIDRTDFQIENEKTLKENGRPANSIPVLQGITKASLQTHS 1304

Query: 1318 FISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQ 1377
            FISAASFQETTRVLTEAAVSGK D L GLKENVIVGRLIPAGTG   ++ R     ++++
Sbjct: 1305 FISAASFQETTRVLTEAAVSGKSDSLMGLKENVIVGRLIPAGTGAMMNRLRALAATRDKE 1364