Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1400 a.a., DNA-directed RNA polymerase subunit beta' from Rhodopseudomonas palustris CGA009

 Score = 1600 bits (4142), Expect = 0.0
 Identities = 816/1373 (59%), Positives = 1032/1373 (75%), Gaps = 16/1373 (1%)

Query: 2    KDLLNFLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61
            ++++N        + FD I+I +ASP+ I SWS+GE+KKPETINYRTFKPERDGLFCARI
Sbjct: 3    QEIMNLFNPTTPAQVFDQIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCARI 62

Query: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLP 121
            FGP+KDYECLCGKYKR+K++G+ICEKC VEVT ++VRR+RMGHIELA+PVAHIWFLKSLP
Sbjct: 63   FGPIKDYECLCGKYKRMKYKGIICEKCSVEVTLSRVRRERMGHIELAAPVAHIWFLKSLP 122

Query: 122  SRIGLLMDMPLRDIERVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAKM 180
            SRIG L+DM L+D+ER+LYFE YVV EPG+TDL+  Q+L+EEEYL   +++G D FTA +
Sbjct: 123  SRIGQLLDMTLKDLERILYFEYYVVLEPGLTDLKERQLLSEEEYLRAQDQYGQDSFTAMI 182

Query: 181  GAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILT 240
            GAEAI++LL  ++L     Q+R E+  T+S+ K KKL KRLK+VEAF  SGNKPEWMILT
Sbjct: 183  GAEAIRELLKGLELEKIDAQLRAEMAETDSDIKHKKLAKRLKIVEAFRYSGNKPEWMILT 242

Query: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQ 300
            V+PV+PPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL APDII+RNEKRMLQ
Sbjct: 243  VVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLMELRAPDIIIRNEKRMLQ 302

Query: 301  ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360
            E+VDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 303  EAVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 362

Query: 361  LRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420
            L+LHQCGLPKKMALELFKPFIYS+L+ +GL+TT+K AKK+VE+E   VWDILDEVIREHP
Sbjct: 363  LKLHQCGLPKKMALELFKPFIYSRLDAKGLSTTVKQAKKLVEKERPEVWDILDEVIREHP 422

Query: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480
            VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 423  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEA 482

Query: 481  RTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTK 540
            R LMMSTNNIL PA+G PIIVPSQD+VLGLYY++  +    GEG      AE E A  +K
Sbjct: 483  RVLMMSTNNILHPANGQPIIVPSQDIVLGLYYLSIMREGLPGEGKVFADLAELEHALYSK 542

Query: 541  TAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKG--LPYSLVNQKLGK 598
               LH ++K R      +E G+ T   ++++TT GR +L Q++PK   LP+ ++N+ + K
Sbjct: 543  VIHLHTKIKYRWHWV--NEEGENT--VRLLETTAGRILLGQVLPKSPKLPFDVINKLMTK 598

Query: 599  KQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAE 658
            ++IS ++++ YR  G K+TVIF D+IM  GF  A  +G+S G DDMVVP +K+  +    
Sbjct: 599  REISGVIDQVYRHCGQKETVIFCDRIMALGFFNAFKAGISFGKDDMVVPGSKWKIVDSTR 658

Query: 659  EEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQES 718
               ++ ++Q+  GL+T GE+YNKV+D W+   + +AK MM+ +S+     R+     ++ 
Sbjct: 659  TLAKDFEQQYNDGLITHGEKYNKVVDAWSKATEEIAKEMMKEISAV----RKAPDGSEQQ 714

Query: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHG 778
             NSIYMMA SGARGS AQ+RQLAGMRGLMA+P G IIETPI +NFKEGL+VL+YF STHG
Sbjct: 715  VNSIYMMAHSGARGSPAQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLSVLEYFNSTHG 774

Query: 779  ARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTEL 838
            ARKGLADTALKTANSGYLTRRLVDVAQD ++T+ DCGT  G+ M   ++ G V  +L   
Sbjct: 775  ARKGLADTALKTANSGYLTRRLVDVAQDCIITQADCGTSLGIKMRAIVDAGTVVASLGSR 834

Query: 839  ALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQC 898
             LGR   ED+  P T+E+++ R  L++E+  + I+   V ++K+RS +TC+   G C +C
Sbjct: 835  ILGRTAGEDVRDPATNEIIVKRGDLMEERDVEAIHQAGVQEVKIRSALTCELVNGICGKC 894

Query: 899  YGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSV 958
            YGRDLARG  VN GEAVGVIAAQSIGEPGTQLTMRTFHIGGAA     ++ I++  +G +
Sbjct: 895  YGRDLARGTPVNHGEAVGVIAAQSIGEPGTQLTMRTFHIGGAAQ-INEQSVIESNFDGKI 953

Query: 959  KLHNAKFVTNKDGKLVITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVA 1018
             + N     N +G  V   R   + I+D  G  +  H++ YG+ +   +GD V  G+ +A
Sbjct: 954  VIKNRAIARNGEGHNVAMVRNMVIAIVDPDGTERATHRIQYGARVHVDEGDMVKRGQRIA 1013

Query: 1019 NWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAI 1078
             W+ +T PI+TEV G + F D+I+  ++S   D+ TG++   V +  +    G D+RPAI
Sbjct: 1014 EWDPYTRPILTEVEGEIGFEDLIEDQSISETLDESTGIAKRIVIDWRS-TRGGADLRPAI 1072

Query: 1079 KLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGL 1138
             +   +GK VL       A+Y L   AI+++D GA+V  GD LARI  +S   +DITGGL
Sbjct: 1073 VIKGKDGK-VLKLARGGDARYMLSVDAILSVDVGAQVKPGDILARISTESAKTRDITGGL 1131

Query: 1139 PRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLII--TRDSGDTYEEMIPKHRQLN 1196
            PRVA+LFEAR+PK+ AI+AE +GT+ FG++ K KRRL I     + +  E +IPK + ++
Sbjct: 1132 PRVAELFEARRPKDAAIIAEIAGTIRFGRDYKNKRRLSIEPLDKNEEAREYLIPKGKHIH 1191

Query: 1197 VFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIV 1256
            + +G+ +E+GD I +G  +PHDIL ++GI  +  Y+ NE+QEVYRLQGV INDKHIE IV
Sbjct: 1192 LQDGDVVEKGDFIVEGNPAPHDILAIKGIEELAAYLVNEIQEVYRLQGVLINDKHIEVIV 1251

Query: 1257 RQMLRKCTITFAGDSEFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATE 1316
            RQML+K  IT  GD++ + GE V+  +    N K VEEGK+PA     LLGITKASL T 
Sbjct: 1252 RQMLQKIEITDQGDTDMISGEQVDKIEFNALNAKAVEEGKKPATGNPVLLGITKASLQTR 1311

Query: 1317 SFISAASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQ 1369
            SF SAASFQETTRVLTEAAV+GK D L GLKENVIVGRLIPAGTG +  + R+
Sbjct: 1312 SFFSAASFQETTRVLTEAAVNGKVDPLEGLKENVIVGRLIPAGTGASMAKIRE 1364