Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1428 a.a., DNA-directed RNA polymerase subunit beta' from Parabacteroides merdae CL09T00C40

 Score = 1338 bits (3463), Expect = 0.0
 Identities = 711/1420 (50%), Positives = 946/1420 (66%), Gaps = 95/1420 (6%)

Query: 7    FLKAQHKTEEFDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVK 66
            F K       F  I IGLASP+ I   S GEV KPETINYRT+KPERDGLFC RIFGP+K
Sbjct: 3    FRKENKIKSNFSKITIGLASPEEILENSSGEVLKPETINYRTYKPERDGLFCERIFGPIK 62

Query: 67   DYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPSRIGL 126
            DYEC CGKYKR++++G++C++CGVEVT+ KVRR+RMGHI L  PVAHIW+ +SLP++IG 
Sbjct: 63   DYECHCGKYKRIRYKGIVCDRCGVEVTEKKVRRERMGHIHLVVPVAHIWYFRSLPNKIGY 122

Query: 127  LMDMPLRDIERVLYFEMYVVTEPGMTD-LERGQMLTEEEYLDRLEEWGDE---------- 175
            L+ +P + ++ ++Y+E YVV +PG  D +    +L+EEEYL  L+    E          
Sbjct: 123  LLGLPTKKLDSIIYYERYVVIQPGCVDTIAELDLLSEEEYLQILDNLPKENQMLEDTDPN 182

Query: 176  -FTAKMGAEAIKDLLASMDLPAEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASG--N 232
             F AK+GAEAI DLLA +DL + + ++R    T  S+ ++ +  KRL++VE+F AS   N
Sbjct: 183  KFIAKIGAEAIYDLLARLDLDSLSYELRHRASTDGSQQRKNEALKRLQVVESFRASRGRN 242

Query: 233  KPEWMILTVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIV 292
            KPEWMI+ V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVI RNNRLKRL+++ AP++I+
Sbjct: 243  KPEWMIVKVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVIIRNNRLKRLIDIKAPEVIL 302

Query: 293  RNEKRMLQESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGR 352
            RNEKRMLQE+VD+L DN R+  A+     RPLKSL+D +KGKQGRFRQNLLGKRVDYS R
Sbjct: 303  RNEKRMLQEAVDSLFDNSRKSSAVKTDANRPLKSLSDSLKGKQGRFRQNLLGKRVDYSAR 362

Query: 353  SVITVGPYLRLHQCGLPKKMALELFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDIL 412
            SVI VGP L++H+CGLPK MA EL+KPF+  KL  RG+  T+K+AKK+V+R+E VVWDIL
Sbjct: 363  SVIVVGPELKMHECGLPKNMAAELYKPFVIRKLIERGIVKTVKSAKKIVDRKEPVVWDIL 422

Query: 413  DEVIREHPVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPL 472
            + V++ HPVLLNRAPTLHRLGIQAF+P LIEGKAIQLHPL C A+NADFDGDQMAVH+PL
Sbjct: 423  EYVMKGHPVLLNRAPTLHRLGIQAFQPKLIEGKAIQLHPLACTAFNADFDGDQMAVHLPL 482

Query: 473  TLEAQLEARTLMMSTNNILSPASGDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAE 532
              EA LEA+ LM++++NIL+PA+G PI VPSQD+VLGLYY+T+ +   +GEG+   GP E
Sbjct: 483  GNEAVLEAQMLMLASHNILNPANGAPITVPSQDMVLGLYYITKMRKGTQGEGLVFYGPEE 542

Query: 533  AEKAYRTKTAELHARVKVRITETIKHENGKLTTETKMIDTTVGRAMLWQIVPKGLPYSLV 592
            A  AY  K  ++HA +KV + +  K  N       KM++T+VGR M+ + VP+ + Y  +
Sbjct: 543  ATIAYNEKKVDIHAPIKVYVNDIDKEGN----PVKKMVETSVGRLMVNEFVPEEVGY--I 596

Query: 593  NQKLGKKQISNLLNEAYRKLGLKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYT 652
            N+ LGKK + +++ +  +  G+  T  F D I   G+  A   G+S  + D+++P  K  
Sbjct: 597  NEVLGKKALRDIIGKVIKACGVARTAQFLDDIKNLGYYMAFKGGLSFNLADVLIPPEKEA 656

Query: 653  EIAEAEEEVREIQEQFQSGLVTAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGE 712
             + E  +EV +I   +  G +T  ERYN++ID W   N +++  +M+ L+++        
Sbjct: 657  LVKEGYDEVEQIMNNYNMGFITNNERYNQIIDTWTHVNSKLSDTLMKQLTAD-------- 708

Query: 713  QEKQESFNSIYMMADSGARGSAAQIRQLAGMRGLMARPD------GSIIETPITANFKEG 766
                + FNSIYMM DSGARGS  QIRQL+GMRGLMA+P       G IIE PI +NFKEG
Sbjct: 709  ---NDGFNSIYMMMDSGARGSKEQIRQLSGMRGLMAKPQKSGAEGGQIIENPILSNFKEG 765

Query: 767  LNVLQYFISTHGARKGLADTALKTANSGYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHI 826
            L+VL+YFISTHGARKGLADTALKTA++GYLTRRLVDV+ DV++ E DCGTL G+V T   
Sbjct: 766  LSVLEYFISTHGARKGLADTALKTADAGYLTRRLVDVSHDVIINEEDCGTLRGLVCTELK 825

Query: 827  EGGDVKVALTELALGRVVSEDILKPGTDEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVV 886
               +V  +L E  LGRV   D++ P T EV++     + E   K I D+ ++ +++RSV+
Sbjct: 826  NNDEVIASLGERILGRVSVHDVIHPLTGEVIVRAGEEIREDAAKKIEDSPIESVEIRSVL 885

Query: 887  TCDSDFGCCAQCYGRDLARGHLVNQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAA 946
            TC+S  G CA+CYGR+LA   +V +GE VGVIAAQSIGEPGTQLT+RTFH+GG AS  A 
Sbjct: 886  TCESKKGVCAKCYGRNLATNQMVQKGEVVGVIAAQSIGEPGTQLTLRTFHVGGIASNVAT 945

Query: 947  ENSIQAKNNGSVKLHNAKFV-TNKDGK--LVITSRASELTIIDEFGR-TKEKHKLPYGSM 1002
            ENSI +K +G +++   + V + ++GK   V+ SR +EL I+D   +     H +PYGS 
Sbjct: 946  ENSITSKYDGVLEIEELRAVDSEENGKKFQVVVSRLAELRIVDPTTKIVLLAHNIPYGSK 1005

Query: 1003 LSKADGDAVAAGETVANWEAHTMPIITEVAGRVQFVDMIDGVTVSRQTDDLTGLSSSEVT 1062
            L   +GD +  G+ +  W+     I++EV+G+++F  +++ VT + ++D+ TGL    + 
Sbjct: 1006 LFFKNGDTIKKGDVIIEWDPFNAVIVSEVSGKIEFESLVENVTYNVESDETTGLKEKIII 1065

Query: 1063 EAAARPAAGKDMRPAIKLVDANGKDVLIPGTDMPAQYFLPGKAIVNLDDGAEVNVGDTLA 1122
            E+  +  A     PA  +VD NG  +          Y LP  A V  D+G  V  G+ L 
Sbjct: 1066 ESKDKTKA-----PAAHIVDENGNYL--------KNYSLPLGAHVVKDEGDMVKAGEVLV 1112

Query: 1123 RIPQKSGGNKDITGGLPRVADLFEARKPKEPAILAEHSGTVSFGKETKGKRRLIITRDSG 1182
            +IP+      DITGGLPRV +LFEAR P  PA+++E  G V FGK  +G R + +T   G
Sbjct: 1113 KIPRAVSKAGDITGGLPRVTELFEARNPSNPAVVSEIDGEVGFGKIKRGNREITVTSKLG 1172

Query: 1183 DTYEEMIPKHRQLNVFEGERIERGDVIADGPESPHDILRLRGIHAVTTYIANEVQEVYRL 1242
            +  + M+P  +QL V E + I  G  ++DG  +P DIL + G  AV  YI NE+Q+VYRL
Sbjct: 1173 EVKKYMVPLSKQLLVQENDYIRAGMPLSDGATTPSDILAIMGPTAVQEYIVNEIQDVYRL 1232

Query: 1243 QGVKINDKHIETIVRQMLRKCTITFAGDSEFLPGETV----------------------- 1279
            QGVKINDKH E IVRQM+RK  I   GD+ FL  + V                       
Sbjct: 1233 QGVKINDKHFEVIVRQMMRKVEIIDPGDTRFLEQQVVDKLEVMDENDRIWGKKVVTDPGD 1292

Query: 1280 -----------------EYSQVKIANRKLVE-EGKEPARFERELLGITKASLATESFISA 1321
                             E S +K  + KLVE     PA   + L GIT+A+L T SF+SA
Sbjct: 1293 SQTLQAGQIVTVRKLRDENSMLKRRDLKLVEVRDAVPATANQILQGITRAALQTNSFMSA 1352

Query: 1322 ASFQETTRVLTEAAVSGKRDDLRGLKENVIVGRLIPAGTG 1361
            ASFQETT+VL EAA++GK D L GLKENVI G LIPAGTG
Sbjct: 1353 ASFQETTKVLNEAAINGKVDRLEGLKENVICGHLIPAGTG 1392