Pairwise Alignments

Query, 1401 a.a., DNA-directed RNA polymerase subunit beta' from Vibrio cholerae E7946 ATCC 55056

Subject, 1413 a.a., DNA-directed RNA polymerase subunit beta' from Phaeobacter inhibens DSM 17395

 Score = 1627 bits (4214), Expect = 0.0
 Identities = 827/1388 (59%), Positives = 1038/1388 (74%), Gaps = 16/1388 (1%)

Query: 17   FDAIKIGLASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARIFGPVKDYECLCGKYK 76
            FD IK+ LASP+ I SWS+GE+KKPETINYRTFKPERDGLFCARIFGP+KDYECLCGKYK
Sbjct: 19   FDEIKVSLASPERILSWSYGEIKKPETINYRTFKPERDGLFCARIFGPIKDYECLCGKYK 78

Query: 77   RLKHRGVICEKCGVEVTQTKVRRDRMGHIELASPVAHIWFLKSLPSRIGLLMDMPLRDIE 136
            R+K+RGV+CEKCGVEVT  KVRR+RMGHIELASPVAHIWFLKSLPSRIGL++DM LRD+E
Sbjct: 79   RMKYRGVVCEKCGVEVTLQKVRRERMGHIELASPVAHIWFLKSLPSRIGLMLDMTLRDLE 138

Query: 137  RVLYFEMYVVTEPGMTDLERGQMLTEEEYLDRLEEWG-DEFTAKMGAEAIKDLLASMDLP 195
            RVLYFE YVV EPG+TDL  GQM+TEEEY+D  +++G D FTA +GAEAI+++LA++DL 
Sbjct: 139  RVLYFENYVVIEPGLTDLTYGQMMTEEEYMDAQDQFGMDAFTANIGAEAIREMLAAIDLE 198

Query: 196  AEAEQMREELDTTNSETKRKKLTKRLKLVEAFVASGNKPEWMILTVLPVLPPDLRPLVPL 255
            AEAE +R EL     E K KK+ KRLK+VE+F+ SGN+PEWM++TV+PV+PP+LRPLVPL
Sbjct: 199  AEAEHLRAELAEATGELKPKKIIKRLKVVESFLESGNRPEWMVMTVIPVIPPELRPLVPL 258

Query: 256  DGGRFATSDLNDLYRRVINRNNRLKRLLELAAPDIIVRNEKRMLQESVDALLDNGRRGRA 315
            DGGRFATSDLNDLYRRVINRNNRLKRL+EL APDIIVRNEKRMLQESVDAL DNGRRGR 
Sbjct: 259  DGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIVRNEKRMLQESVDALFDNGRRGRV 318

Query: 316  ITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPYLRLHQCGLPKKMALE 375
            ITG+NKRPLKSL+DM+KGKQGRFRQNLLGKRVD+SGRSVI  GP L+LHQCGLPKKMALE
Sbjct: 319  ITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDFSGRSVIVTGPELKLHQCGLPKKMALE 378

Query: 376  LFKPFIYSKLETRGLATTIKAAKKMVEREEAVVWDILDEVIREHPVLLNRAPTLHRLGIQ 435
            LFKPFIYS+LE +GL++T+K AKK+VE+E   VWDILDEVIREHPV+LNRAPTLHRLGIQ
Sbjct: 379  LFKPFIYSRLEAKGLSSTVKQAKKLVEKERPEVWDILDEVIREHPVMLNRAPTLHRLGIQ 438

Query: 436  AFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEARTLMMSTNNILSPAS 495
            AFEP LIEGKAIQLHPLVC+A+NADFDGDQMAVHVPL+LEAQLEAR LMMSTNN+LSPA+
Sbjct: 439  AFEPTLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQLEARVLMMSTNNVLSPAN 498

Query: 496  GDPIIVPSQDVVLGLYYMTREKINAKGEGMYLTGPAEAEKAYRTKTAELHARVKVRITET 555
            G PIIVPSQD++LGLYY+T E+    GEG       E + A       LH ++  RIT+ 
Sbjct: 499  GAPIIVPSQDMILGLYYVTLEREGMPGEGKIFGTIDEVQHALDAGEVHLHTKITARITQI 558

Query: 556  IKHENGKLTTETKMIDTTVGRAMLWQIVPKGL--PYSLVNQKLGKKQISNLLNEAYRKLG 613
             +  N  L    K  +TT GR  L  ++PK +  P+ LVN+ L KK++  +++  YR  G
Sbjct: 559  DEEGNEVL----KRFETTPGRVRLGALLPKNVKAPFELVNRLLRKKEVQQVIDTVYRYCG 614

Query: 614  LKDTVIFADQIMYTGFAYAALSGVSVGIDDMVVPAAKYTEIAEAEEEVREIQEQFQSGLV 673
             K++VIF DQIM  GF  A  +G+S G DDMV+P  K+T + E  ++V++ ++Q+  GL+
Sbjct: 615  QKESVIFCDQIMTMGFREAFKAGISFGKDDMVIPDTKWTLVDETRDQVKDFEQQYMDGLI 674

Query: 674  TAGERYNKVIDIWASTNDRVAKAMMENLSSEQVINRQGEQEKQESFNSIYMMADSGARGS 733
            T GE+YNKV+D W+  ND+V  AMM  +S++    ++ E       NS+YMMA SGARGS
Sbjct: 675  TQGEKYNKVVDAWSKCNDKVTDAMMGTISAD----KRNEAGAVMEPNSVYMMAHSGARGS 730

Query: 734  AAQIRQLAGMRGLMARPDGSIIETPITANFKEGLNVLQYFISTHGARKGLADTALKTANS 793
              Q++QL GMRGLMA+P+G IIETPI +NFKEGL VL+YF STHGARKGL+DTALKTANS
Sbjct: 731  VTQMKQLGGMRGLMAKPNGDIIETPIISNFKEGLTVLEYFNSTHGARKGLSDTALKTANS 790

Query: 794  GYLTRRLVDVAQDVVVTEHDCGTLEGVVMTPHIEGGDVKVALTELALGRVVSEDILKPGT 853
            GYLTRRLVDVAQD +V + DCGT   +     +  G+V  +L E  LGRV +EDI KPGT
Sbjct: 791  GYLTRRLVDVAQDCIVRDRDCGTEAAITAEAAVNDGEVVASLGERILGRVAAEDIKKPGT 850

Query: 854  DEVLIPRNTLLDEKWCKVINDNSVDQIKVRSVVTCDSDFGCCAQCYGRDLARGHLVNQGE 913
            +E+++    L+DE+    + +  V   ++RS +TC+++ G CAQCYGRDLARG  VN GE
Sbjct: 851  EEIIVAVGQLIDERMADAVEEAGVQSTRIRSPLTCEAEEGVCAQCYGRDLARGTQVNTGE 910

Query: 914  AVGVIAAQSIGEPGTQLTMRTFHIGGAASTAAAENSIQAKNNGSVKLHNAKFVTNKDGKL 973
            AVG+IAAQSIGEPGTQLTMRTFHIGG A     ++ ++A   G +     + + N +G+ 
Sbjct: 911  AVGIIAAQSIGEPGTQLTMRTFHIGGVAQ-GGQQSFLEASQEGKIVFEMPQTLENANGET 969

Query: 974  VITSRASELTIIDEFGRTKEKHKLPYGSMLSKADGDAVAAGETVANWEAHTMPIITEVAG 1033
            ++  R  +L I DE G  +  HKL YGS L   +G +VA G+ +  W+ +T+PII E  G
Sbjct: 970  LVVGRNMKLIIQDEHGEERASHKLGYGSKLFVKEGQSVARGDKLFEWDPYTLPIIAEKPG 1029

Query: 1034 RVQFVDMIDGVTVSRQTDDLTGLSSSEVTEAAARPAAGKDMRPAIKLVDANGKDVLIPGT 1093
              ++VD++ G+ V  +TD+ TG++   V +  A P  G D++P I LVD +G+ V     
Sbjct: 1030 TAKYVDLVSGIAVRDETDEATGMTQKIVIDWRAAP-KGSDLKPEIILVDGDGEPVRSDAG 1088

Query: 1094 DMPAQYFLPGKAIVNLDDGAEVNVGDTLARIPQKSGGNKDITGGLPRVADLFEARKPKEP 1153
            + P  Y +   AI+++++G ++  GD +ARIP++    KDITGGLPRVA+LFEAR+PK+ 
Sbjct: 1089 N-PLTYPMSVDAILSVEEGQQIMAGDVVARIPREGAKTKDITGGLPRVAELFEARRPKDH 1147

Query: 1154 AILAEHSGTVSFGKETKGKRRLII--TRDSGDTYEEMIPKHRQLNVFEGERIERGDVIAD 1211
            AI+AE  G V FG++ K KRR+ I    +S +  E M+PK + + V EG+ +++GD I D
Sbjct: 1148 AIIAEIDGYVRFGRDYKNKRRISIEPADESMEPVEYMVPKGKHIPVQEGDFVQKGDYIMD 1207

Query: 1212 GPESPHDILRLRGIHAVTTYIANEVQEVYRLQGVKINDKHIETIVRQMLRKCTITFAGDS 1271
            G  +PHDIL + G+ A+  Y+ +EVQ+VYRLQGVKINDKHIE IVRQML+K  I+ +GD+
Sbjct: 1208 GNPAPHDILSIMGVEALANYMIDEVQDVYRLQGVKINDKHIEVIVRQMLQKWEISDSGDT 1267

Query: 1272 EFLPGETVEYSQVKIANRKLVEEGKEPARFERELLGITKASLATESFISAASFQETTRVL 1331
              L GE V+  +   AN K +  GK PA+ E  LLGITKASL T SFISAASFQETTRVL
Sbjct: 1268 TLLKGEHVDKQEFDTANEKALSRGKRPAQGEPILLGITKASLQTRSFISAASFQETTRVL 1327

Query: 1332 TEAAVSGKRDDLRGLKENVIVGRLIPAGTGFAYHQDRQAKRAQEQQGPSAEQATDNLAAL 1391
            TEA+V GKRD L GLKENVIVGRLIPAGTG A  + R   + ++     A +     AA 
Sbjct: 1328 TEASVQGKRDKLVGLKENVIVGRLIPAGTGGATQRVRNIAQGRDNVVLEARREEAEAAAA 1387

Query: 1392 LNAGFSSD 1399
            L A    D
Sbjct: 1388 LAAPSMDD 1395